miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 142716 0.66 0.992263
Target:  5'- cCGCGAguccucgGACAUGU--GGUccUUCGAGUACg -3'
miRNA:   3'- -GCGCU-------UUGUACGgcCCA--AAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 12340 0.67 0.99128
Target:  5'- uGCGAGGCuaugGUGCUGGGcguggUGGGCGa -3'
miRNA:   3'- gCGCUUUG----UACGGCCCaaa--GCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 239444 0.67 0.99128
Target:  5'- uCGUaGAACGUGUCGGGguccaGcAGCACg -3'
miRNA:   3'- -GCGcUUUGUACGGCCCaaag-C-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 40176 0.67 0.99128
Target:  5'- gCGCGuuGGCGUGCCGguccaGGUUaagcUUGAGCGg -3'
miRNA:   3'- -GCGCu-UUGUACGGC-----CCAA----AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 215233 0.67 0.990075
Target:  5'- aGCGAAGCccGUCaGGGUgaaGAGCGa -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCAaagCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 92730 0.67 0.990075
Target:  5'- aGCGugGC--GCCGGGaccaGAGCACg -3'
miRNA:   3'- gCGCuuUGuaCGGCCCaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 235581 0.67 0.988882
Target:  5'- cCGCGGGACGUGCgGGaGgacgagaggcggacUCGGGCGg -3'
miRNA:   3'- -GCGCUUUGUACGgCC-Caa------------AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 15444 0.67 0.988743
Target:  5'- aCGCGGAAUAaagagucGCUGGGUUcUGAGC-Cg -3'
miRNA:   3'- -GCGCUUUGUa------CGGCCCAAaGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 96859 0.67 0.988743
Target:  5'- gGCGGAAg--GCCGGGUggu-AGCACu -3'
miRNA:   3'- gCGCUUUguaCGGCCCAaagcUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 200804 0.67 0.988743
Target:  5'- uGCGc-ACGUGCCuGGGcUUCGAGUc- -3'
miRNA:   3'- gCGCuuUGUACGG-CCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 86740 0.67 0.987277
Target:  5'- aCGCGGAACAUgaggagGCUGGGcacCGAgagGCGCg -3'
miRNA:   3'- -GCGCUUUGUA------CGGCCCaaaGCU---CGUG- -5'
14640 3' -52.5 NC_003521.1 + 35087 0.67 0.985667
Target:  5'- gCGCucGACAUGCCGGa-UUCGAgGCGg -3'
miRNA:   3'- -GCGcuUUGUACGGCCcaAAGCU-CGUg -5'
14640 3' -52.5 NC_003521.1 + 12929 0.67 0.985667
Target:  5'- gGCGGGACcaggGCCGGGag--GAGCAa -3'
miRNA:   3'- gCGCUUUGua--CGGCCCaaagCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 154002 0.67 0.985667
Target:  5'- uGCGcAGCAcGCaCGGGUcgCGcAGCACc -3'
miRNA:   3'- gCGCuUUGUaCG-GCCCAaaGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 119583 0.67 0.985667
Target:  5'- uGCaGGAACAcGCUGGGcggCGGGUGCa -3'
miRNA:   3'- gCG-CUUUGUaCGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 59252 0.68 0.983906
Target:  5'- aCGUGggGC-UGCUGcGGgcgUUCGuaAGCGCg -3'
miRNA:   3'- -GCGCuuUGuACGGC-CCa--AAGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 148902 0.68 0.983906
Target:  5'- aCGCcgaGGAGCGccGCCGcGGcaUCGAGCACc -3'
miRNA:   3'- -GCG---CUUUGUa-CGGC-CCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 126703 0.68 0.983906
Target:  5'- gGCG-AACAUGCCGG----UGAGCAg -3'
miRNA:   3'- gCGCuUUGUACGGCCcaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 206172 0.68 0.983906
Target:  5'- aGCccaGGAGCAgggcgGCCaGGGccgCGAGCACg -3'
miRNA:   3'- gCG---CUUUGUa----CGG-CCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 40915 0.68 0.981986
Target:  5'- aGCGAGGCGggggcgGcCCGGGg---GAGCGCc -3'
miRNA:   3'- gCGCUUUGUa-----C-GGCCCaaagCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.