miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 235565 1.08 0.007283
Target:  5'- cCUGUGGUACAACAACCCGCGGGACGUg -3'
miRNA:   3'- -GACACCAUGUUGUUGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 14437 0.79 0.420492
Target:  5'- -cGUGGUGCAcACGGCCCuGCGGcGGCGUc -3'
miRNA:   3'- gaCACCAUGU-UGUUGGG-CGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 174057 0.77 0.520612
Target:  5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3'
miRNA:   3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 187498 0.72 0.795757
Target:  5'- -gGUGGUcACGACGAUCCGacgagacggcuccucCGGGACGa -3'
miRNA:   3'- gaCACCA-UGUUGUUGGGC---------------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 196954 0.72 0.801011
Target:  5'- -cGUGG-GCGACGGCCCGggagccggcCGGGGCGc -3'
miRNA:   3'- gaCACCaUGUUGUUGGGC---------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 166212 0.71 0.826465
Target:  5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3'
miRNA:   3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 168118 0.71 0.834623
Target:  5'- -cGUGGaucgccgaggACGACAGCgCCGUGGGugGa -3'
miRNA:   3'- gaCACCa---------UGUUGUUG-GGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 191274 0.71 0.850408
Target:  5'- -gGUGGUGCucuuCAugacGCCCaaGUGGGACGUg -3'
miRNA:   3'- gaCACCAUGuu--GU----UGGG--CGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 104214 0.71 0.850408
Target:  5'- -cGUGcUGCuGCAGCCCaGCGaGGACGUg -3'
miRNA:   3'- gaCACcAUGuUGUUGGG-CGC-CCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 117711 0.71 0.850408
Target:  5'- ----cGUACAGCGGCCCgGCGaGGACGg -3'
miRNA:   3'- gacacCAUGUUGUUGGG-CGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 124936 0.7 0.858022
Target:  5'- -gGU-GUACAGCAGUCCGUGGGugGg -3'
miRNA:   3'- gaCAcCAUGUUGUUGGGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 24887 0.7 0.858022
Target:  5'- --aUGGUGCGcuaccucacCAugCCGCGGGACGc -3'
miRNA:   3'- gacACCAUGUu--------GUugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 16995 0.7 0.872661
Target:  5'- ---aGGgACAGCAggcGCCCGCGGuGGCGg -3'
miRNA:   3'- gacaCCaUGUUGU---UGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 119460 0.7 0.892424
Target:  5'- ---aGGcGCGACAgugugaaGCCgCGCGGGGCGUg -3'
miRNA:   3'- gacaCCaUGUUGU-------UGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 68252 0.7 0.893073
Target:  5'- cCUGgcGGUGCGACcgccGACCC-CGGGACa- -3'
miRNA:   3'- -GACa-CCAUGUUG----UUGGGcGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 131719 0.7 0.893073
Target:  5'- -cGUGGUguGCAACAGCaaucgUCGCuGGACGUg -3'
miRNA:   3'- gaCACCA--UGUUGUUG-----GGCGcCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 173242 0.69 0.899448
Target:  5'- -cGUGuugGCGACucugGCCCGCGGGGCc- -3'
miRNA:   3'- gaCACca-UGUUGu---UGGGCGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 95960 0.69 0.911533
Target:  5'- aUGcGGUuCGGgGACCCGCGGGgaGCGa -3'
miRNA:   3'- gACaCCAuGUUgUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 117530 0.69 0.91724
Target:  5'- -cGUGGgcUACGACGACCUGgCGGcACGUc -3'
miRNA:   3'- gaCACC--AUGUUGUUGGGC-GCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 51200 0.69 0.91724
Target:  5'- aUGUcGGUGUGACAAUCCGCGGGcUGa -3'
miRNA:   3'- gACA-CCAUGUUGUUGGGCGCCCuGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.