miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 7448 0.68 0.932999
Target:  5'- ---cGGcgcACAGC-ACCaCGCGGGACGUg -3'
miRNA:   3'- gacaCCa--UGUUGuUGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 14437 0.79 0.420492
Target:  5'- -cGUGGUGCAcACGGCCCuGCGGcGGCGUc -3'
miRNA:   3'- gaCACCAUGU-UGUUGGG-CGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 14478 0.68 0.94672
Target:  5'- ------cGCGGCGcuACCCGCGGGGCGc -3'
miRNA:   3'- gacaccaUGUUGU--UGGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 16995 0.7 0.872661
Target:  5'- ---aGGgACAGCAggcGCCCGCGGuGGCGg -3'
miRNA:   3'- gacaCCaUGUUGU---UGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 17975 0.66 0.982754
Target:  5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3'
miRNA:   3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5'
14640 5' -54.8 NC_003521.1 + 24887 0.7 0.858022
Target:  5'- --aUGGUGCGcuaccucacCAugCCGCGGGACGc -3'
miRNA:   3'- gacACCAUGUu--------GUugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 30263 0.67 0.961926
Target:  5'- -cGUGGcGCAGCuGACCCugGCGGGcGCGc -3'
miRNA:   3'- gaCACCaUGUUG-UUGGG--CGCCC-UGCa -5'
14640 5' -54.8 NC_003521.1 + 32405 0.66 0.980775
Target:  5'- -cGUGcgacACAGCAGCCCGUGGcGcACGg -3'
miRNA:   3'- gaCACca--UGUUGUUGGGCGCC-C-UGCa -5'
14640 5' -54.8 NC_003521.1 + 36395 0.67 0.961926
Target:  5'- -cGUGcUGCuGGCGGCagCGCGGGGCGUg -3'
miRNA:   3'- gaCACcAUG-UUGUUGg-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 38163 0.68 0.94672
Target:  5'- gUGUaGGUGCAggGCGuCCCaGCGGGGCc- -3'
miRNA:   3'- gACA-CCAUGU--UGUuGGG-CGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 38456 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 39229 0.66 0.978631
Target:  5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3'
miRNA:   3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 51200 0.69 0.91724
Target:  5'- aUGUcGGUGUGACAAUCCGCGGGcUGa -3'
miRNA:   3'- gACA-CCAUGUUGUUGGGCGCCCuGCa -5'
14640 5' -54.8 NC_003521.1 + 58742 0.68 0.927973
Target:  5'- ---cGGUGCAGCAGCCacuGCGGGcUGa -3'
miRNA:   3'- gacaCCAUGUUGUUGGg--CGCCCuGCa -5'
14640 5' -54.8 NC_003521.1 + 64594 0.69 0.92272
Target:  5'- --aUGGUGaAGCGGCUggCGCGGGACGa -3'
miRNA:   3'- gacACCAUgUUGUUGG--GCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 65043 0.66 0.982371
Target:  5'- gCUGUGGgguaugccucuaACAACgAGCCCG-GGGACc- -3'
miRNA:   3'- -GACACCa-----------UGUUG-UUGGGCgCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 67563 0.66 0.982754
Target:  5'- aCUGUGucagGCGGCGGgcCCCGCGGGcCa- -3'
miRNA:   3'- -GACACca--UGUUGUU--GGGCGCCCuGca -5'
14640 5' -54.8 NC_003521.1 + 68252 0.7 0.893073
Target:  5'- cCUGgcGGUGCGACcgccGACCC-CGGGACa- -3'
miRNA:   3'- -GACa-CCAUGUUG----UUGGGcGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 76322 0.67 0.968267
Target:  5'- -gGUGGcgGCGACAG-CUGCGGaGGCGa -3'
miRNA:   3'- gaCACCa-UGUUGUUgGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 77667 0.66 0.976315
Target:  5'- -cGUcGGgagACAGCAGgCCGgGGGGCa- -3'
miRNA:   3'- gaCA-CCa--UGUUGUUgGGCgCCCUGca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.