Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14640 | 5' | -54.8 | NC_003521.1 | + | 7448 | 0.68 | 0.932999 |
Target: 5'- ---cGGcgcACAGC-ACCaCGCGGGACGUg -3' miRNA: 3'- gacaCCa--UGUUGuUGG-GCGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 14437 | 0.79 | 0.420492 |
Target: 5'- -cGUGGUGCAcACGGCCCuGCGGcGGCGUc -3' miRNA: 3'- gaCACCAUGU-UGUUGGG-CGCC-CUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 14478 | 0.68 | 0.94672 |
Target: 5'- ------cGCGGCGcuACCCGCGGGGCGc -3' miRNA: 3'- gacaccaUGUUGU--UGGGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 16995 | 0.7 | 0.872661 |
Target: 5'- ---aGGgACAGCAggcGCCCGCGGuGGCGg -3' miRNA: 3'- gacaCCaUGUUGU---UGGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 17975 | 0.66 | 0.982754 |
Target: 5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3' miRNA: 3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 24887 | 0.7 | 0.858022 |
Target: 5'- --aUGGUGCGcuaccucacCAugCCGCGGGACGc -3' miRNA: 3'- gacACCAUGUu--------GUugGGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 30263 | 0.67 | 0.961926 |
Target: 5'- -cGUGGcGCAGCuGACCCugGCGGGcGCGc -3' miRNA: 3'- gaCACCaUGUUG-UUGGG--CGCCC-UGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 32405 | 0.66 | 0.980775 |
Target: 5'- -cGUGcgacACAGCAGCCCGUGGcGcACGg -3' miRNA: 3'- gaCACca--UGUUGUUGGGCGCC-C-UGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 36395 | 0.67 | 0.961926 |
Target: 5'- -cGUGcUGCuGGCGGCagCGCGGGGCGUg -3' miRNA: 3'- gaCACcAUG-UUGUUGg-GCGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 38163 | 0.68 | 0.94672 |
Target: 5'- gUGUaGGUGCAggGCGuCCCaGCGGGGCc- -3' miRNA: 3'- gACA-CCAUGU--UGUuGGG-CGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 38456 | 0.67 | 0.965198 |
Target: 5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3' miRNA: 3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 39229 | 0.66 | 0.978631 |
Target: 5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3' miRNA: 3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 51200 | 0.69 | 0.91724 |
Target: 5'- aUGUcGGUGUGACAAUCCGCGGGcUGa -3' miRNA: 3'- gACA-CCAUGUUGUUGGGCGCCCuGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 58742 | 0.68 | 0.927973 |
Target: 5'- ---cGGUGCAGCAGCCacuGCGGGcUGa -3' miRNA: 3'- gacaCCAUGUUGUUGGg--CGCCCuGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 64594 | 0.69 | 0.92272 |
Target: 5'- --aUGGUGaAGCGGCUggCGCGGGACGa -3' miRNA: 3'- gacACCAUgUUGUUGG--GCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 65043 | 0.66 | 0.982371 |
Target: 5'- gCUGUGGgguaugccucuaACAACgAGCCCG-GGGACc- -3' miRNA: 3'- -GACACCa-----------UGUUG-UUGGGCgCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 67563 | 0.66 | 0.982754 |
Target: 5'- aCUGUGucagGCGGCGGgcCCCGCGGGcCa- -3' miRNA: 3'- -GACACca--UGUUGUU--GGGCGCCCuGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 68252 | 0.7 | 0.893073 |
Target: 5'- cCUGgcGGUGCGACcgccGACCC-CGGGACa- -3' miRNA: 3'- -GACa-CCAUGUUG----UUGGGcGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 76322 | 0.67 | 0.968267 |
Target: 5'- -gGUGGcgGCGACAG-CUGCGGaGGCGa -3' miRNA: 3'- gaCACCa-UGUUGUUgGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 77667 | 0.66 | 0.976315 |
Target: 5'- -cGUcGGgagACAGCAGgCCGgGGGGCa- -3' miRNA: 3'- gaCA-CCa--UGUUGUUgGGCgCCCUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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