miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 126547 0.68 0.94672
Target:  5'- gCUGUGGUACucgugcGCGAaggCCGUGGGcaGCGg -3'
miRNA:   3'- -GACACCAUGu-----UGUUg--GGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 58742 0.68 0.927973
Target:  5'- ---cGGUGCAGCAGCCacuGCGGGcUGa -3'
miRNA:   3'- gacaCCAUGUUGUUGGg--CGCCCuGCa -5'
14640 5' -54.8 NC_003521.1 + 86177 0.68 0.927973
Target:  5'- ---cGGUGCGcaccaGCGACUCGCGGGccACGg -3'
miRNA:   3'- gacaCCAUGU-----UGUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 148461 0.68 0.927973
Target:  5'- -gGUGcGUGCugauGACGaaaaGCCCGCGGGuCGUu -3'
miRNA:   3'- gaCAC-CAUG----UUGU----UGGGCGCCCuGCA- -5'
14640 5' -54.8 NC_003521.1 + 88675 0.68 0.932999
Target:  5'- -gGUGGgcCGGCGGCCCGgcucgGGGACa- -3'
miRNA:   3'- gaCACCauGUUGUUGGGCg----CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 99312 0.68 0.932999
Target:  5'- -gGUGGUGCGACuuCgCGCccaGGGAUGa -3'
miRNA:   3'- gaCACCAUGUUGuuGgGCG---CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 7448 0.68 0.932999
Target:  5'- ---cGGcgcACAGC-ACCaCGCGGGACGUg -3'
miRNA:   3'- gacaCCa--UGUUGuUGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 142732 0.68 0.933489
Target:  5'- aUGUGGUccuucgaguacgaagGCGACGACggggugaccagcguCCGCGGcGGCGUc -3'
miRNA:   3'- gACACCA---------------UGUUGUUG--------------GGCGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 224773 0.68 0.942371
Target:  5'- -aGUuGUGCAGCAgcGCCCGCaccacgucgugcGGGACGc -3'
miRNA:   3'- gaCAcCAUGUUGU--UGGGCG------------CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 64594 0.69 0.92272
Target:  5'- --aUGGUGaAGCGGCUggCGCGGGACGa -3'
miRNA:   3'- gacACCAUgUUGUUGG--GCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 182276 0.69 0.92272
Target:  5'- uUGaGGUACuGCGuGCCCGCGgGGAUGg -3'
miRNA:   3'- gACaCCAUGuUGU-UGGGCGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 117530 0.69 0.91724
Target:  5'- -cGUGGgcUACGACGACCUGgCGGcACGUc -3'
miRNA:   3'- gaCACC--AUGUUGUUGGGC-GCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 187498 0.72 0.795757
Target:  5'- -gGUGGUcACGACGAUCCGacgagacggcuccucCGGGACGa -3'
miRNA:   3'- gaCACCA-UGUUGUUGGGC---------------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 104214 0.71 0.850408
Target:  5'- -cGUGcUGCuGCAGCCCaGCGaGGACGUg -3'
miRNA:   3'- gaCACcAUGuUGUUGGG-CGC-CCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 124936 0.7 0.858022
Target:  5'- -gGU-GUACAGCAGUCCGUGGGugGg -3'
miRNA:   3'- gaCAcCAUGUUGUUGGGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 119460 0.7 0.892424
Target:  5'- ---aGGcGCGACAgugugaaGCCgCGCGGGGCGUg -3'
miRNA:   3'- gacaCCaUGUUGU-------UGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 131719 0.7 0.893073
Target:  5'- -cGUGGUguGCAACAGCaaucgUCGCuGGACGUg -3'
miRNA:   3'- gaCACCA--UGUUGUUG-----GGCGcCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 68252 0.7 0.893073
Target:  5'- cCUGgcGGUGCGACcgccGACCC-CGGGACa- -3'
miRNA:   3'- -GACa-CCAUGUUG----UUGGGcGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 95960 0.69 0.911533
Target:  5'- aUGcGGUuCGGgGACCCGCGGGgaGCGa -3'
miRNA:   3'- gACaCCAuGUUgUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 51200 0.69 0.91724
Target:  5'- aUGUcGGUGUGACAAUCCGCGGGcUGa -3'
miRNA:   3'- gACA-CCAUGUUGUUGGGCGCCCuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.