Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14640 | 5' | -54.8 | NC_003521.1 | + | 117711 | 0.71 | 0.850408 |
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Target: 5'- ----cGUACAGCGGCCCgGCGaGGACGg -3' miRNA: 3'- gacacCAUGUUGUUGGG-CGC-CCUGCa -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 191274 | 0.71 | 0.850408 |
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Target: 5'- -gGUGGUGCucuuCAugacGCCCaaGUGGGACGUg -3' miRNA: 3'- gaCACCAUGuu--GU----UGGG--CGCCCUGCA- -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 168118 | 0.71 | 0.834623 |
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Target: 5'- -cGUGGaucgccgaggACGACAGCgCCGUGGGugGa -3' miRNA: 3'- gaCACCa---------UGUUGUUG-GGCGCCCugCa -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 166212 | 0.71 | 0.826465 |
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Target: 5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3' miRNA: 3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 196954 | 0.72 | 0.801011 |
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Target: 5'- -cGUGG-GCGACGGCCCGggagccggcCGGGGCGc -3' miRNA: 3'- gaCACCaUGUUGUUGGGC---------GCCCUGCa -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 187498 | 0.72 | 0.795757 |
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Target: 5'- -gGUGGUcACGACGAUCCGacgagacggcuccucCGGGACGa -3' miRNA: 3'- gaCACCA-UGUUGUUGGGC---------------GCCCUGCa -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 174057 | 0.77 | 0.520612 |
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Target: 5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3' miRNA: 3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 14437 | 0.79 | 0.420492 |
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Target: 5'- -cGUGGUGCAcACGGCCCuGCGGcGGCGUc -3' miRNA: 3'- gaCACCAUGU-UGUUGGG-CGCC-CUGCA- -5' |
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| 14640 | 5' | -54.8 | NC_003521.1 | + | 235565 | 1.08 | 0.007283 |
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Target: 5'- cCUGUGGUACAACAACCCGCGGGACGUg -3' miRNA: 3'- -GACACCAUGUUGUUGGGCGCCCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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