miRNA display CGI


Results 81 - 100 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 201548 0.66 0.872334
Target:  5'- -cCGGCgaCGUGGcGCGGCuguAUCGGUCCa -3'
miRNA:   3'- gaGCCG--GCGUU-CGCCGcu-UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 101963 0.66 0.875058
Target:  5'- uCUCGGggugcgagaugggguCCaGCAGGCGGUGcAGCUGcguGUCCa -3'
miRNA:   3'- -GAGCC---------------GG-CGUUCGCCGC-UUGGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 99183 0.66 0.875058
Target:  5'- -cCGGCCugggggcugaaGguGGCGGCGGAggauacggcggggucCgCGGUCCu -3'
miRNA:   3'- gaGCCGG-----------CguUCGCCGCUU---------------G-GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 116464 0.66 0.879088
Target:  5'- -gCGGCCGUGgugggacacguGGCGGCGAugaagaGcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGCUugg---C-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 130753 0.66 0.865391
Target:  5'- gUCGGCgggCGCGAGCGcCGcGCCGGg-- -3'
miRNA:   3'- gAGCCG---GCGUUCGCcGCuUGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 173465 0.66 0.865391
Target:  5'- -cCGGCgGU-AGUGGCGucgauACCGG-CCu -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCu----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 132608 0.66 0.8539
Target:  5'- gUCGGCgucCGCAacggcuuccagacucGGCGGCGGcgccACCGGcgguucugcuUCCu -3'
miRNA:   3'- gAGCCG---GCGU---------------UCGCCGCU----UGGCC----------AGG- -5'
14641 3' -59.8 NC_003521.1 + 137168 0.66 0.865391
Target:  5'- -gCGGCCGC-AGCGGCc-GCCG--CCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCcaGG- -5'
14641 3' -59.8 NC_003521.1 + 86347 0.66 0.858263
Target:  5'- --aGGCCGU--GCaGCGAGCCGauguaGUCCu -3'
miRNA:   3'- gagCCGGCGuuCGcCGCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 217379 0.66 0.864686
Target:  5'- -aCGGCCaggcacaccguggGCAccgccaggcugAGCGGCGGcaugaaGCCGGUgCa -3'
miRNA:   3'- gaGCCGG-------------CGU-----------UCGCCGCU------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 120949 0.66 0.865391
Target:  5'- -nCGGCgagggGCAGGgGGCGGGgCGGUUUg -3'
miRNA:   3'- gaGCCGg----CGUUCgCCGCUUgGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 142989 0.66 0.865391
Target:  5'- uCUCuGUCGCAccGGCGGuCGcGCC-GUCCg -3'
miRNA:   3'- -GAGcCGGCGU--UCGCC-GCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 218074 0.66 0.865391
Target:  5'- uCUCGaaGCacaGCgAGGCGGCGGcGCCGGUg- -3'
miRNA:   3'- -GAGC--CGg--CG-UUCGCCGCU-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 74791 0.66 0.865391
Target:  5'- -aCGGCgGCAgcgguAGCGGCGAGacgcggacggaCGGcgCCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCUUg----------GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 66743 0.67 0.833499
Target:  5'- aUCGuGCCGCGAcuggacgacaucccGCgGGUGAugccGCCGGcCCa -3'
miRNA:   3'- gAGC-CGGCGUU--------------CG-CCGCU----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 164260 0.67 0.835825
Target:  5'- aUCGuGCCGgAGGC-GCGGACCGccgcUCCu -3'
miRNA:   3'- gAGC-CGGCgUUCGcCGCUUGGCc---AGG- -5'
14641 3' -59.8 NC_003521.1 + 70373 0.67 0.828013
Target:  5'- --aGaGCCGCAGGCGGCGGuagaGGUa- -3'
miRNA:   3'- gagC-CGGCGUUCGCCGCUugg-CCAgg -5'
14641 3' -59.8 NC_003521.1 + 18734 0.67 0.835825
Target:  5'- -gCGGCgGCGaucguGGCGGCGGuggcgccgACgGGUCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCU--------UGgCCAGg -5'
14641 3' -59.8 NC_003521.1 + 46417 0.67 0.842718
Target:  5'- cCUCGGCCuccucguGCGAGgguaucCGGCGGggcugcggggGCUGGUCg -3'
miRNA:   3'- -GAGCCGG-------CGUUC------GCCGCU----------UGGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.