miRNA display CGI


Results 81 - 100 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 106356 0.7 0.657948
Target:  5'- uUgGGCUGCGguAGCGGgGAACCGccaucUCCg -3'
miRNA:   3'- gAgCCGGCGU--UCGCCgCUUGGCc----AGG- -5'
14641 3' -59.8 NC_003521.1 + 40173 0.7 0.667502
Target:  5'- -gCGGCgCGU---UGGCGuGCCGGUCCa -3'
miRNA:   3'- gaGCCG-GCGuucGCCGCuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 137311 0.7 0.667502
Target:  5'- -gCGGCUGCugcGCGGCGAccCCGaGUUCa -3'
miRNA:   3'- gaGCCGGCGuu-CGCCGCUu-GGC-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 193304 0.7 0.667502
Target:  5'- gUCGGCgCGgGGGUGGUGGGCaCGGUg- -3'
miRNA:   3'- gAGCCG-GCgUUCGCCGCUUG-GCCAgg -5'
14641 3' -59.8 NC_003521.1 + 34520 0.7 0.674176
Target:  5'- -gCGGCCGCGggccgagacgcgcgAGCGGCGAcagaguucgGCCuuguGGUCg -3'
miRNA:   3'- gaGCCGGCGU--------------UCGCCGCU---------UGG----CCAGg -5'
14641 3' -59.8 NC_003521.1 + 76658 0.7 0.686529
Target:  5'- uCUCGGCCucuuauacgGUAuGUGGCGAugaagccgacgACgGGUCCg -3'
miRNA:   3'- -GAGCCGG---------CGUuCGCCGCU-----------UGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 187887 0.7 0.686529
Target:  5'- cCUCgGGCgGCAcgGGCGGCGGggGCaGGUCg -3'
miRNA:   3'- -GAG-CCGgCGU--UCGCCGCU--UGgCCAGg -5'
14641 3' -59.8 NC_003521.1 + 128035 0.7 0.638791
Target:  5'- cCUCGcGCCGCAcGCGGUaGAAgUGG-CCg -3'
miRNA:   3'- -GAGC-CGGCGUuCGCCG-CUUgGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 227637 0.71 0.629203
Target:  5'- -gCGGCC-CGAGCGGCacGCCuGGUCa -3'
miRNA:   3'- gaGCCGGcGUUCGCCGcuUGG-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 152040 0.71 0.629203
Target:  5'- --aGGCCGC-AGCGGUGcuucACCcgcaGGUCCg -3'
miRNA:   3'- gagCCGGCGuUCGCCGCu---UGG----CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 153124 0.72 0.534415
Target:  5'- -aCGGCaGCAGGCGGCu--UUGGUCCa -3'
miRNA:   3'- gaGCCGgCGUUCGCCGcuuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 26108 0.72 0.54372
Target:  5'- gUCGGCCaGguAGaguuCGGCGGGCCGGcugcuUCCg -3'
miRNA:   3'- gAGCCGG-CguUC----GCCGCUUGGCC-----AGG- -5'
14641 3' -59.8 NC_003521.1 + 117234 0.72 0.553077
Target:  5'- -aCGGCCGC-GGCGGCuc-CCGGcgCCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuuGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 104693 0.71 0.580465
Target:  5'- --gGGCCGUggGCGGCGucgacgugcccucGACCgcGGUCUc -3'
miRNA:   3'- gagCCGGCGuuCGCCGC-------------UUGG--CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 148629 0.71 0.581415
Target:  5'- -gCGGCCG--GGCGGCGAAaaaCGGcCCc -3'
miRNA:   3'- gaGCCGGCguUCGCCGCUUg--GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 109975 0.71 0.590931
Target:  5'- -cUGcGCCuGCAguagGGCGGCcuGCCGGUCCa -3'
miRNA:   3'- gaGC-CGG-CGU----UCGCCGcuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 42612 0.71 0.610038
Target:  5'- -aCGGCCGCcGGCGGC--GCCGucgCCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCca-GG- -5'
14641 3' -59.8 NC_003521.1 + 121781 0.71 0.618658
Target:  5'- gUCGGCCacggGCAGGUGGCGGuacuugcGCuCGG-CCg -3'
miRNA:   3'- gAGCCGG----CGUUCGCCGCU-------UG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 92022 0.71 0.619617
Target:  5'- -gCGGCgGCGgcGGCGGUGggUCcgggGGUCCc -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCuuGG----CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 126081 0.7 0.686529
Target:  5'- -gUGGCCGCGccacccccaCGGCGuGCCGGaUCCa -3'
miRNA:   3'- gaGCCGGCGUuc-------GCCGCuUGGCC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.