miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 133750 0.66 0.850956
Target:  5'- -cUGGCCgGCAGGCccGGCGAuuCCGGg-- -3'
miRNA:   3'- gaGCCGG-CGUUCG--CCGCUu-GGCCagg -5'
14641 3' -59.8 NC_003521.1 + 217379 0.66 0.864686
Target:  5'- -aCGGCCaggcacaccguggGCAccgccaggcugAGCGGCGGcaugaaGCCGGUgCa -3'
miRNA:   3'- gaGCCGG-------------CGU-----------UCGCCGCU------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 142989 0.66 0.865391
Target:  5'- uCUCuGUCGCAccGGCGGuCGcGCC-GUCCg -3'
miRNA:   3'- -GAGcCGGCGU--UCGCC-GCuUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 118203 0.66 0.850956
Target:  5'- --gGGCCGcCGAGCGcGCGGccGCCGccGUCg -3'
miRNA:   3'- gagCCGGC-GUUCGC-CGCU--UGGC--CAGg -5'
14641 3' -59.8 NC_003521.1 + 126567 0.66 0.84873
Target:  5'- --aGGCCGUggGCaGCGGgaagccgccgucguGCCGGUg- -3'
miRNA:   3'- gagCCGGCGuuCGcCGCU--------------UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 130303 0.66 0.850956
Target:  5'- --aGGCCGCGGcGCcGCGcauCCaGGUCCa -3'
miRNA:   3'- gagCCGGCGUU-CGcCGCuu-GG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 188186 0.66 0.850956
Target:  5'- -gCGuGCCGCGAG-GGCcGAcgcaggaucacCCGGUCCu -3'
miRNA:   3'- gaGC-CGGCGUUCgCCGcUU-----------GGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 209562 0.66 0.850956
Target:  5'- -gUGGCgGCGacGGUGGCGGG--GGUCCg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 119772 0.66 0.850956
Target:  5'- gCUCGGCCucCAGGCuGCGGuccaccuuCCGGcgCCa -3'
miRNA:   3'- -GAGCCGGc-GUUCGcCGCUu-------GGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 52186 0.66 0.850216
Target:  5'- -gUGuGCCGCcgGGGCGGCGAGCucaucagacaguaCGGgggCCg -3'
miRNA:   3'- gaGC-CGGCG--UUCGCCGCUUG-------------GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 72845 0.66 0.850956
Target:  5'- -aCGGCCugGGGCGGCGAcgguaggcacGgCGGUCg -3'
miRNA:   3'- gaGCCGGcgUUCGCCGCU----------UgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 86347 0.66 0.858263
Target:  5'- --aGGCCGU--GCaGCGAGCCGauguaGUCCu -3'
miRNA:   3'- gagCCGGCGuuCGcCGCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 131044 0.66 0.850956
Target:  5'- cCUgGGCgGC-GGCGGCGGGCC--UCUg -3'
miRNA:   3'- -GAgCCGgCGuUCGCCGCUUGGccAGG- -5'
14641 3' -59.8 NC_003521.1 + 142925 0.66 0.850956
Target:  5'- gUCGGCguUGCAgcAGCGGCGGuCagGGUCa -3'
miRNA:   3'- gAGCCG--GCGU--UCGCCGCUuGg-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 132608 0.66 0.8539
Target:  5'- gUCGGCgucCGCAacggcuuccagacucGGCGGCGGcgccACCGGcgguucugcuUCCu -3'
miRNA:   3'- gAGCCG---GCGU---------------UCGCCGCU----UGGCC----------AGG- -5'
14641 3' -59.8 NC_003521.1 + 120949 0.66 0.865391
Target:  5'- -nCGGCgagggGCAGGgGGCGGGgCGGUUUg -3'
miRNA:   3'- gaGCCGg----CGUUCgCCGCUUgGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 122110 0.66 0.850956
Target:  5'- -gCGGCUGC-AGCGGCGucucGCCGcGgCUg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCu---UGGC-CaGG- -5'
14641 3' -59.8 NC_003521.1 + 140563 0.66 0.885649
Target:  5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5'
14641 3' -59.8 NC_003521.1 + 70127 0.66 0.8539
Target:  5'- --gGGCCGCuAucagggccucgagcuGCGGCGAGCgCGGcugCCu -3'
miRNA:   3'- gagCCGGCGuU---------------CGCCGCUUG-GCCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.