miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 236465 1.12 0.00167
Target:  5'- gCUCGGCCGCAAGCGGCGAACCGGUCCg -3'
miRNA:   3'- -GAGCCGGCGUUCGCCGCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 127668 0.85 0.092912
Target:  5'- uCUUGGCCGCGAGCaGGCG-GCgGGUCCa -3'
miRNA:   3'- -GAGCCGGCGUUCG-CCGCuUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 72 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 240621 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 200300 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 98533 0.79 0.22571
Target:  5'- gCUgGGCCGCugcAGCGGCG-GCgGGUCCc -3'
miRNA:   3'- -GAgCCGGCGu--UCGCCGCuUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 93497 0.79 0.241653
Target:  5'- gUCGGgCGCGAGaUGGCGGACgGGUCUc -3'
miRNA:   3'- gAGCCgGCGUUC-GCCGCUUGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 27456 0.78 0.264358
Target:  5'- uUCGGCCGUGAGCgccaGGCuGGCCaGGUCCg -3'
miRNA:   3'- gAGCCGGCGUUCG----CCGcUUGG-CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 106477 0.77 0.308204
Target:  5'- uCUCGGCCaGCAucGGCGGCGGGg-GGUCCc -3'
miRNA:   3'- -GAGCCGG-CGU--UCGCCGCUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 232868 0.76 0.367865
Target:  5'- -cCGGCCGCGAcaccGCGGCGAucuggaggaugagcuACgCGGUCUg -3'
miRNA:   3'- gaGCCGGCGUU----CGCCGCU---------------UG-GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 201665 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 1438 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 136396 0.75 0.387871
Target:  5'- cCUCGGCCGCGGGCcGCGugugaggcagacAGCC-GUCCg -3'
miRNA:   3'- -GAGCCGGCGUUCGcCGC------------UUGGcCAGG- -5'
14641 3' -59.8 NC_003521.1 + 163957 0.75 0.395754
Target:  5'- uCUCGGCCGCGgacgccgaAGaUGGCGGucGCCGGgCCu -3'
miRNA:   3'- -GAGCCGGCGU--------UC-GCCGCU--UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 128393 0.75 0.395754
Target:  5'- cCUgGGCCGCcuGAGCGG-GcgUCGGUCCg -3'
miRNA:   3'- -GAgCCGGCG--UUCGCCgCuuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 217337 0.74 0.420012
Target:  5'- -aCGGUgGCGGaCGGCG-GCCGGUCCu -3'
miRNA:   3'- gaGCCGgCGUUcGCCGCuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 132688 0.74 0.428295
Target:  5'- aUCGGCuCGCGcccGGCuGGCGGgacgcggcACUGGUCCa -3'
miRNA:   3'- gAGCCG-GCGU---UCG-CCGCU--------UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 43841 0.74 0.428295
Target:  5'- -cCGGCCGCGGGCccgucacaGGCGccccGGCCGGcUCCc -3'
miRNA:   3'- gaGCCGGCGUUCG--------CCGC----UUGGCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 89174 0.74 0.445148
Target:  5'- -cCGGggaGaCGAGCGGCGAACCGGgCCg -3'
miRNA:   3'- gaGCCgg-C-GUUCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 17764 0.74 0.453712
Target:  5'- -cUGGCCGUAccgccGGCGGCGGA-CGGUCa -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCGCUUgGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.