miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 72 0.81 0.174727
Target:  5'- -gCGGCgGCGuGCGGCGGGCCGG-CCg -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCUUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 108 0.73 0.506859
Target:  5'- --aGGCCG-AAGCGGCG-GCCGGagCCg -3'
miRNA:   3'- gagCCGGCgUUCGCCGCuUGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 1320 0.66 0.872334
Target:  5'- -cCGGCgaCGUGGcGCGGCuguAUCGGUCCa -3'
miRNA:   3'- gaGCCG--GCGUU-CGCCGcu-UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 1438 0.75 0.387871
Target:  5'- aCUgGGCCGCGAGCuGCGccGCCGGUg- -3'
miRNA:   3'- -GAgCCGGCGUUCGcCGCu-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 4343 0.66 0.872334
Target:  5'- cCUCGGUCu----CGGaCGGACCGGUUCg -3'
miRNA:   3'- -GAGCCGGcguucGCC-GCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 5302 0.66 0.858263
Target:  5'- -cCGGCauguuuCGCGggGGCGGCGugccccGCCGG-CCg -3'
miRNA:   3'- gaGCCG------GCGU--UCGCCGCu-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 5868 0.66 0.872334
Target:  5'- gUUGGuCCGCAGGCuG-GAGCCGucgucGUCCu -3'
miRNA:   3'- gAGCC-GGCGUUCGcCgCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 6049 0.66 0.871648
Target:  5'- uCUCGGgCGguAGCGGgucgaCGAagggaaugcgacgGCCGGUgCg -3'
miRNA:   3'- -GAGCCgGCguUCGCC-----GCU-------------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 6392 0.68 0.795267
Target:  5'- --gGcGCCGCAgcuaccgcGGCGGCGA-CgGGUCUu -3'
miRNA:   3'- gagC-CGGCGU--------UCGCCGCUuGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 7655 0.7 0.677032
Target:  5'- -gCGGCCGCcacGGCGGCGcgGACagCGGUgCCc -3'
miRNA:   3'- gaGCCGGCGu--UCGCCGC--UUG--GCCA-GG- -5'
14641 3' -59.8 NC_003521.1 + 7739 0.67 0.843475
Target:  5'- -gCGG-CGCGAGCGGCgGAGgCGGcggcagUCCc -3'
miRNA:   3'- gaGCCgGCGUUCGCCG-CUUgGCC------AGG- -5'
14641 3' -59.8 NC_003521.1 + 7973 0.67 0.811107
Target:  5'- -gCGGCCGgGaggguccgcGGCGGCGGgggagguACCGGggcagcgCCg -3'
miRNA:   3'- gaGCCGGCgU---------UCGCCGCU-------UGGCCa------GG- -5'
14641 3' -59.8 NC_003521.1 + 13853 0.68 0.772845
Target:  5'- gCUCGGCgcgggggucucUGCGGGCGGCGccgccauggauuucGCCGGggggCCc -3'
miRNA:   3'- -GAGCCG-----------GCGUUCGCCGCu-------------UGGCCa---GG- -5'
14641 3' -59.8 NC_003521.1 + 14190 0.68 0.755083
Target:  5'- --aGGCCGCGAgcaagcuggugugcuGCGGCGAGCCccugacgCCg -3'
miRNA:   3'- gagCCGGCGUU---------------CGCCGCUUGGcca----GG- -5'
14641 3' -59.8 NC_003521.1 + 15223 0.71 0.581415
Target:  5'- --gGGCUGCAGGCGGCcGAGCgcgaGG-CCg -3'
miRNA:   3'- gagCCGGCGUUCGCCG-CUUGg---CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 15527 0.66 0.885649
Target:  5'- -gCGGCgGCAuGUGGCGAacgcGCUGGg-- -3'
miRNA:   3'- gaGCCGgCGUuCGCCGCU----UGGCCagg -5'
14641 3' -59.8 NC_003521.1 + 17483 0.73 0.471104
Target:  5'- -aCGGCacCGguAGCGGCGccGCCGGUCa -3'
miRNA:   3'- gaGCCG--GCguUCGCCGCu-UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 17764 0.74 0.453712
Target:  5'- -cUGGCCGUAccgccGGCGGCGGA-CGGUCa -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCGCUUgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 18734 0.67 0.835825
Target:  5'- -gCGGCgGCGaucguGGCGGCGGuggcgccgACgGGUCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCU--------UGgCCAGg -5'
14641 3' -59.8 NC_003521.1 + 19111 0.67 0.843475
Target:  5'- --gGGagacgaCGCGGGUGGCGGgccGCCGGUguaCCa -3'
miRNA:   3'- gagCCg-----GCGUUCGCCGCU---UGGCCA---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.