miRNA display CGI


Results 21 - 40 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 168539 0.66 0.879088
Target:  5'- -gCGGCCaGCGcGGCGGCGGcGCUGG-Cg -3'
miRNA:   3'- gaGCCGG-CGU-UCGCCGCU-UGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 99029 0.66 0.879088
Target:  5'- -aUGG-CGCcGGCucCGGGCCGGUCCg -3'
miRNA:   3'- gaGCCgGCGuUCGccGCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 238461 0.66 0.879088
Target:  5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3'
miRNA:   3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 63871 0.66 0.879088
Target:  5'- -aCGGUgGacgAGGCGGCGcGCCGGgagCUg -3'
miRNA:   3'- gaGCCGgCg--UUCGCCGCuUGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 202527 0.66 0.879088
Target:  5'- cCUCGGCCuGCAAcaacuGCcGUGAaaacACCGGcaUCCg -3'
miRNA:   3'- -GAGCCGG-CGUU-----CGcCGCU----UGGCC--AGG- -5'
14641 3' -59.8 NC_003521.1 + 98477 0.66 0.879088
Target:  5'- -gCGGCCGC-GGCGGCcguGgCGGcggCCu -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcu-UgGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 98252 0.66 0.879088
Target:  5'- -gCGGCCacgGCGGGCacGGCGAGCCuGG-Cg -3'
miRNA:   3'- gaGCCGG---CGUUCG--CCGCUUGG-CCaGg -5'
14641 3' -59.8 NC_003521.1 + 38233 0.66 0.879088
Target:  5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3'
miRNA:   3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 178121 0.66 0.879088
Target:  5'- uCUgGGCCuCGGGCagGGCGggUCccgaagauaGGUCCa -3'
miRNA:   3'- -GAgCCGGcGUUCG--CCGCuuGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 166746 0.66 0.879088
Target:  5'- gUCGGCCaGCAccAGCuG-GAugCGGUCg -3'
miRNA:   3'- gAGCCGG-CGU--UCGcCgCUugGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 170714 0.66 0.879088
Target:  5'- -gCGGCC-CuucGGCGGCacGCCGG-CCa -3'
miRNA:   3'- gaGCCGGcGu--UCGCCGcuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 193323 0.66 0.879088
Target:  5'- -aCGGCUGCAucGCGGU---CCGGgCCg -3'
miRNA:   3'- gaGCCGGCGUu-CGCCGcuuGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 124034 0.66 0.877082
Target:  5'- -gCGGCCGUAGacggccagcgugccGCGGCGG--CGGcCCa -3'
miRNA:   3'- gaGCCGGCGUU--------------CGCCGCUugGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 23216 0.66 0.875058
Target:  5'- -gCGGCCGaGAcgccccugcugguccGgGGCGGACCcggGGUCCu -3'
miRNA:   3'- gaGCCGGCgUU---------------CgCCGCUUGG---CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 99183 0.66 0.875058
Target:  5'- -cCGGCCugggggcugaaGguGGCGGCGGAggauacggcggggucCgCGGUCCu -3'
miRNA:   3'- gaGCCGG-----------CguUCGCCGCUU---------------G-GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 101963 0.66 0.875058
Target:  5'- uCUCGGggugcgagaugggguCCaGCAGGCGGUGcAGCUGcguGUCCa -3'
miRNA:   3'- -GAGCC---------------GG-CGUUCGCCGC-UUGGC---CAGG- -5'
14641 3' -59.8 NC_003521.1 + 102944 0.66 0.872334
Target:  5'- aUCGGa--CAGGCGGuUGAuCUGGUCCa -3'
miRNA:   3'- gAGCCggcGUUCGCC-GCUuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 129040 0.66 0.872334
Target:  5'- gUCGGCCGUguucuuGAGCGcGCGcagcACCGuGUgCa -3'
miRNA:   3'- gAGCCGGCG------UUCGC-CGCu---UGGC-CAgG- -5'
14641 3' -59.8 NC_003521.1 + 228962 0.66 0.872334
Target:  5'- -gCGGCCGaagagcguGCGGUGAucucGCaGGUCCc -3'
miRNA:   3'- gaGCCGGCguu-----CGCCGCU----UGgCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 151525 0.66 0.872334
Target:  5'- gUCGGCCagAGGCGGCGcgGACgCGGguuguaCCa -3'
miRNA:   3'- gAGCCGGcgUUCGCCGC--UUG-GCCa-----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.