Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14643 | 3' | -52.1 | NC_003521.1 | + | 240324 | 1.1 | 0.008858 |
Target: 5'- cGUCACCCCUGAAAACCGCGUGUUCUCu -3' miRNA: 3'- -CAGUGGGGACUUUUGGCGCACAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 40096 | 1.1 | 0.008858 |
Target: 5'- cGUCACCCCUGAAAACCGCGUGUUCUCu -3' miRNA: 3'- -CAGUGGGGACUUUUGGCGCACAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 10410 | 0.73 | 0.861758 |
Target: 5'- cGUCGCCCCgcaucucaAAAACCGCGUG-UCg- -3' miRNA: 3'- -CAGUGGGGac------UUUUGGCGCACaAGag -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 223159 | 0.73 | 0.868531 |
Target: 5'- -aCGCCCgcaguCUGGAGGCCGCaucgcucaucacgGUGUUCUCu -3' miRNA: 3'- caGUGGG-----GACUUUUGGCG-------------CACAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 107609 | 0.73 | 0.869273 |
Target: 5'- aUCGCCCCUGAAcccgcgccccGACCGCGg--UCg- -3' miRNA: 3'- cAGUGGGGACUU----------UUGGCGCacaAGag -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 135983 | 0.72 | 0.89715 |
Target: 5'- cUCGCCCagcgugucgGggGGCCGCGUcacgcccguGUUCUCg -3' miRNA: 3'- cAGUGGGga-------CuuUUGGCGCA---------CAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 121493 | 0.71 | 0.936975 |
Target: 5'- --gACCCCUGcccGACCGCGUGcgCaUCa -3' miRNA: 3'- cagUGGGGACuu-UUGGCGCACaaG-AG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 216221 | 0.7 | 0.950469 |
Target: 5'- cUCGCCCCUGAGGugaCGCGU--UCUa -3' miRNA: 3'- cAGUGGGGACUUUug-GCGCAcaAGAg -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 121562 | 0.7 | 0.954501 |
Target: 5'- -cCACCaCCUGcaucuuGACCacgcGCGUGUUCUCc -3' miRNA: 3'- caGUGG-GGACuu----UUGG----CGCACAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 117224 | 0.7 | 0.958304 |
Target: 5'- -gCACCCgCUGAcgGCCGCGgcggCUCc -3' miRNA: 3'- caGUGGG-GACUuuUGGCGCacaaGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 128751 | 0.7 | 0.958304 |
Target: 5'- -cCGCCCCUGAuccccACCGCGgcGUcCUCc -3' miRNA: 3'- caGUGGGGACUuu---UGGCGCa-CAaGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 235233 | 0.69 | 0.961883 |
Target: 5'- -gCACCUCU----ACCGCGUGUUCg- -3' miRNA: 3'- caGUGGGGAcuuuUGGCGCACAAGag -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 98184 | 0.69 | 0.968391 |
Target: 5'- --gACCgCUG-AGGCCGCG-GUUCUCc -3' miRNA: 3'- cagUGGgGACuUUUGGCGCaCAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 35095 | 0.69 | 0.974067 |
Target: 5'- gGUCugUUCaUGAGAACCGUGUGcgUCUa -3' miRNA: 3'- -CAGugGGG-ACUUUUGGCGCACa-AGAg -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 187689 | 0.68 | 0.976609 |
Target: 5'- -gCGCCCUcgGgcGACUGCGUGUaccugaUCUCg -3' miRNA: 3'- caGUGGGGa-CuuUUGGCGCACA------AGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 104618 | 0.68 | 0.982946 |
Target: 5'- -aCGCCgCUGAGAACCGCGccgaugaUGUUgaCg -3' miRNA: 3'- caGUGGgGACUUUUGGCGC-------ACAAgaG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 239302 | 0.67 | 0.986167 |
Target: 5'- -cCAuCCCCUGAGGcguucguggucguuGCUGUGUG-UCUCa -3' miRNA: 3'- caGU-GGGGACUUU--------------UGGCGCACaAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 24610 | 0.67 | 0.98958 |
Target: 5'- cGUCACCUCaggggcgaggUGAAAACCGCagGUG-UCUa -3' miRNA: 3'- -CAGUGGGG----------ACUUUUGGCG--CACaAGAg -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 5360 | 0.67 | 0.991977 |
Target: 5'- --aGCCCgUGAGAGggcCCGCGcGUUCUUc -3' miRNA: 3'- cagUGGGgACUUUU---GGCGCaCAAGAG- -5' |
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14643 | 3' | -52.1 | NC_003521.1 | + | 155282 | 0.67 | 0.991977 |
Target: 5'- -aCGCCUCUGAGAugaCGCGgcUGUuccUCUCg -3' miRNA: 3'- caGUGGGGACUUUug-GCGC--ACA---AGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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