miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 3' -47.5 NC_003521.1 + 240417 1.1 0.026552
Target:  5'- cUCCGAAGGCAGAUUUUAUACCCAGUGu -3'
miRNA:   3'- -AGGCUUCCGUCUAAAAUAUGGGUCAC- -5'
14644 3' -47.5 NC_003521.1 + 40189 1.1 0.026552
Target:  5'- cUCCGAAGGCAGAUUUUAUACCCAGUGu -3'
miRNA:   3'- -AGGCUUCCGUCUAAAAUAUGGGUCAC- -5'
14644 3' -47.5 NC_003521.1 + 120250 0.73 0.980615
Target:  5'- gCCGAAGGUGGAUccgUUAUcCCCGGg- -3'
miRNA:   3'- aGGCUUCCGUCUAa--AAUAuGGGUCac -5'
14644 3' -47.5 NC_003521.1 + 157607 0.71 0.995549
Target:  5'- gCCGAGGGCAccg--UGUACCCcagcgAGUGg -3'
miRNA:   3'- aGGCUUCCGUcuaaaAUAUGGG-----UCAC- -5'
14644 3' -47.5 NC_003521.1 + 77691 0.7 0.996772
Target:  5'- -aCGAGGGCAGAcag-AUGCCCgaggaggcggcGGUGg -3'
miRNA:   3'- agGCUUCCGUCUaaaaUAUGGG-----------UCAC- -5'
14644 3' -47.5 NC_003521.1 + 119249 0.69 0.999105
Target:  5'- cUUGAacAGGUGGAUg--GUGCCCAGUa -3'
miRNA:   3'- aGGCU--UCCGUCUAaaaUAUGGGUCAc -5'
14644 3' -47.5 NC_003521.1 + 236253 0.69 0.999256
Target:  5'- aCCGGAGGCcGGcg-UGUGCCCcggccguAGUGa -3'
miRNA:   3'- aGGCUUCCGuCUaaaAUAUGGG-------UCAC- -5'
14644 3' -47.5 NC_003521.1 + 130978 0.66 0.999948
Target:  5'- -gUGggGGCAGugagcacgGUACCCAGc- -3'
miRNA:   3'- agGCuuCCGUCuaaaa---UAUGGGUCac -5'
14644 3' -47.5 NC_003521.1 + 79160 0.66 0.999963
Target:  5'- cCCGAAGacguugacGCAGAUgcuguagccGUGCUCGGUGg -3'
miRNA:   3'- aGGCUUC--------CGUCUAaaa------UAUGGGUCAC- -5'
14644 3' -47.5 NC_003521.1 + 3959 0.66 0.999963
Target:  5'- aUCCGAAGaaGCGGAgg----ACCCGGg- -3'
miRNA:   3'- -AGGCUUC--CGUCUaaaauaUGGGUCac -5'
14644 3' -47.5 NC_003521.1 + 203214 0.66 0.999973
Target:  5'- aUCCGuGGGCAGcUUgaagucGCCCAGa- -3'
miRNA:   3'- -AGGCuUCCGUCuAAaaua--UGGGUCac -5'
14644 3' -47.5 NC_003521.1 + 195408 0.66 0.999985
Target:  5'- gCCGAcGGCGGGcaccggcUACCUGGUGa -3'
miRNA:   3'- aGGCUuCCGUCUaaaau--AUGGGUCAC- -5'
14644 3' -47.5 NC_003521.1 + 229065 0.66 0.999985
Target:  5'- -aCGAAGGCAGuc-----ACCCAGg- -3'
miRNA:   3'- agGCUUCCGUCuaaaauaUGGGUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.