Results 1 - 20 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14644 | 5' | -64.3 | NC_003521.1 | + | 240461 | 1.1 | 0.000825 |
Target: 5'- gGGCAGCGGUCGCAGGCGCCGCCUCCGg -3' miRNA: 3'- -CCGUCGCCAGCGUCCGCGGCGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 40233 | 1.1 | 0.000825 |
Target: 5'- gGGCAGCGGUCGCAGGCGCCGCCUCCGg -3' miRNA: 3'- -CCGUCGCCAGCGUCCGCGGCGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 102772 | 0.83 | 0.060773 |
Target: 5'- cGCGGCGGUCGCGGGCGacccaCGCC-CCGu -3' miRNA: 3'- cCGUCGCCAGCGUCCGCg----GCGGaGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 140742 | 0.82 | 0.079625 |
Target: 5'- cGuCGGCGGUCG-AGGCGcCCGCCUCCGu -3' miRNA: 3'- cC-GUCGCCAGCgUCCGC-GGCGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 44077 | 0.8 | 0.101515 |
Target: 5'- gGGCAGCagacGGU-GCAGGCGCCGCCgCCa -3' miRNA: 3'- -CCGUCG----CCAgCGUCCGCGGCGGaGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 73145 | 0.8 | 0.106528 |
Target: 5'- gGGCAGCGG-CgGC-GGCGCCGCCUCgGc -3' miRNA: 3'- -CCGUCGCCaG-CGuCCGCGGCGGAGgC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 60748 | 0.79 | 0.128988 |
Target: 5'- cGGCGGCGGcagucgcCGCGGGagaaucccCGCCGCCUCCu -3' miRNA: 3'- -CCGUCGCCa------GCGUCC--------GCGGCGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 94946 | 0.78 | 0.145174 |
Target: 5'- cGGCGGCcucGUCGUcGGCGCCGCCcgCCGc -3' miRNA: 3'- -CCGUCGc--CAGCGuCCGCGGCGGa-GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 17016 | 0.78 | 0.148627 |
Target: 5'- uGGCGGCGG-CGCAGGC-CCGUCgUCUGg -3' miRNA: 3'- -CCGUCGCCaGCGUCCGcGGCGG-AGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 207943 | 0.78 | 0.152154 |
Target: 5'- cGGCAGCaccGGcggCGCGGGCGCCaaaccgaucgGCCUCCa -3' miRNA: 3'- -CCGUCG---CCa--GCGUCCGCGG----------CGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 180108 | 0.77 | 0.167032 |
Target: 5'- gGGCAGCGG-CGUGGugcgacccGCGCCGCCcCCGg -3' miRNA: 3'- -CCGUCGCCaGCGUC--------CGCGGCGGaGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 106358 | 0.77 | 0.170555 |
Target: 5'- gGGCuGCGGUaGCGGGgaaccgccaucucCGCCGCCUCCu -3' miRNA: 3'- -CCGuCGCCAgCGUCC-------------GCGGCGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 224023 | 0.77 | 0.174951 |
Target: 5'- gGGCccGGCGGUCgggGCGGGCGCCGUCgCCc -3' miRNA: 3'- -CCG--UCGCCAG---CGUCCGCGGCGGaGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 77036 | 0.76 | 0.191795 |
Target: 5'- aGGcCGGCGGU-GguGGCGCCGCUaCCGu -3' miRNA: 3'- -CC-GUCGCCAgCguCCGCGGCGGaGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 46089 | 0.76 | 0.191795 |
Target: 5'- -cCGGC-GUCGCAGaccuuguaGCGCCGCCUCCGg -3' miRNA: 3'- ccGUCGcCAGCGUC--------CGCGGCGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 140124 | 0.76 | 0.196223 |
Target: 5'- -uCAGCGGcCGC-GGCGgCGCCUCCGc -3' miRNA: 3'- ccGUCGCCaGCGuCCGCgGCGGAGGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 99706 | 0.76 | 0.196223 |
Target: 5'- gGGCGGCcgcuucugcaGGUCGCAGGCGUCGUCgcgcacccagCCGc -3' miRNA: 3'- -CCGUCG----------CCAGCGUCCGCGGCGGa---------GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 152759 | 0.76 | 0.20074 |
Target: 5'- gGGCAGCG--CGCGgaacGGCGUCGCCUCCu -3' miRNA: 3'- -CCGUCGCcaGCGU----CCGCGGCGGAGGc -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 123584 | 0.76 | 0.205347 |
Target: 5'- uGGCGGCGG-CGcCGGGaGCCGCCgcggCCGu -3' miRNA: 3'- -CCGUCGCCaGC-GUCCgCGGCGGa---GGC- -5' |
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14644 | 5' | -64.3 | NC_003521.1 | + | 102352 | 0.75 | 0.21972 |
Target: 5'- gGGCGGCaGGUgGCAgauguGGCGCCGCCggCGa -3' miRNA: 3'- -CCGUCG-CCAgCGU-----CCGCGGCGGagGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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