miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 5540 0.73 0.3048
Target:  5'- cGGCAGcCGG-CGCGGcCGCCGCCaucguuguUCCGu -3'
miRNA:   3'- -CCGUC-GCCaGCGUCcGCGGCGG--------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 5655 0.67 0.606632
Target:  5'- uGGCGGCGGaggguggggggUCGagacaCGGGCGCC-CgUCCGc -3'
miRNA:   3'- -CCGUCGCC-----------AGC-----GUCCGCGGcGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 6374 0.66 0.644093
Target:  5'- cGGUcGgGGUCGCggagGGGCGCCGCagCUa -3'
miRNA:   3'- -CCGuCgCCAGCG----UCCGCGGCGgaGGc -5'
14644 5' -64.3 NC_003521.1 + 6406 0.74 0.245577
Target:  5'- cGCGGCGG-CGaCGGGUcuuGCCGCCUCgGg -3'
miRNA:   3'- cCGUCGCCaGC-GUCCG---CGGCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 7990 0.66 0.647838
Target:  5'- cGGCGGCGGgggagguaccgggGCA-GCGCCGUagCUCCa -3'
miRNA:   3'- -CCGUCGCCag-----------CGUcCGCGGCG--GAGGc -5'
14644 5' -64.3 NC_003521.1 + 13859 0.72 0.345308
Target:  5'- cGCGGgGGUCucuGCGGGCGgCGCCgCCa -3'
miRNA:   3'- cCGUCgCCAG---CGUCCGCgGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 14454 0.68 0.541885
Target:  5'- uGCGGCGG-CGuCAGcCGCCGCUcCCGc -3'
miRNA:   3'- cCGUCGCCaGC-GUCcGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 14756 0.68 0.560199
Target:  5'- cGGCcGCGGcCG-GGGCG-CGCCUUCGu -3'
miRNA:   3'- -CCGuCGCCaGCgUCCGCgGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 16042 0.66 0.672126
Target:  5'- cGCAcgacGUGGU-GCGGGCGCUGCUgcacaacugCCGg -3'
miRNA:   3'- cCGU----CGCCAgCGUCCGCGGCGGa--------GGC- -5'
14644 5' -64.3 NC_003521.1 + 16213 0.66 0.6628
Target:  5'- aGGUGGCGG-CGCcc-UGCCGCCUggCCGa -3'
miRNA:   3'- -CCGUCGCCaGCGuccGCGGCGGA--GGC- -5'
14644 5' -64.3 NC_003521.1 + 17016 0.78 0.148627
Target:  5'- uGGCGGCGG-CGCAGGC-CCGUCgUCUGg -3'
miRNA:   3'- -CCGUCGCCaGCGUCCGcGGCGG-AGGC- -5'
14644 5' -64.3 NC_003521.1 + 17183 0.68 0.551019
Target:  5'- uGGCAGCuGg-GCAGGCGCaucguggaCGCCUaCCa -3'
miRNA:   3'- -CCGUCGcCagCGUCCGCG--------GCGGA-GGc -5'
14644 5' -64.3 NC_003521.1 + 17484 0.69 0.505898
Target:  5'- cGGCAcCGGUaGC-GGCGCCGCCggucaCGg -3'
miRNA:   3'- -CCGUcGCCAgCGuCCGCGGCGGag---GC- -5'
14644 5' -64.3 NC_003521.1 + 18170 0.68 0.541885
Target:  5'- gGGCAGCG--UGgAGGCGCugcgCGCCUgCCGg -3'
miRNA:   3'- -CCGUCGCcaGCgUCCGCG----GCGGA-GGC- -5'
14644 5' -64.3 NC_003521.1 + 18747 0.68 0.560199
Target:  5'- uGGCGGCGGUgGCgccgacGGGuCGCUGCUgcgaCGg -3'
miRNA:   3'- -CCGUCGCCAgCG------UCC-GCGGCGGag--GC- -5'
14644 5' -64.3 NC_003521.1 + 18909 0.66 0.653453
Target:  5'- cGGCAGCcccgaagGguGGCGCCGCgCgCCGg -3'
miRNA:   3'- -CCGUCGccag---CguCCGCGGCG-GaGGC- -5'
14644 5' -64.3 NC_003521.1 + 22162 0.67 0.587973
Target:  5'- cGGgAGaCGGUgGagagggacgAGGCGCCGCCggCCGu -3'
miRNA:   3'- -CCgUC-GCCAgCg--------UCCGCGGCGGa-GGC- -5'
14644 5' -64.3 NC_003521.1 + 26886 0.7 0.413001
Target:  5'- uGGC-GCGGa-GCAGGUGaCCGCCgUCCa -3'
miRNA:   3'- -CCGuCGCCagCGUCCGC-GGCGG-AGGc -5'
14644 5' -64.3 NC_003521.1 + 28308 0.69 0.497059
Target:  5'- aGCAGCGGcagCGaccccGGCGCgGCCUgCGg -3'
miRNA:   3'- cCGUCGCCa--GCgu---CCGCGgCGGAgGC- -5'
14644 5' -64.3 NC_003521.1 + 30857 0.68 0.568498
Target:  5'- cGGCAGCGGUU---GGCGuuguugcucaguuCCGCgUCCGa -3'
miRNA:   3'- -CCGUCGCCAGcguCCGC-------------GGCGgAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.