miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 119334 0.72 0.324584
Target:  5'- cGCAcGCGGUCggGCAGGgGuCCGgCCUCCa -3'
miRNA:   3'- cCGU-CGCCAG--CGUCCgC-GGC-GGAGGc -5'
14644 5' -64.3 NC_003521.1 + 135372 0.73 0.279278
Target:  5'- cGCGGCGGUuaucgccCGCGGGCGCCaaaCCgugCCGa -3'
miRNA:   3'- cCGUCGCCA-------GCGUCCGCGGc--GGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 70381 0.73 0.292132
Target:  5'- aGGCGGCGGUagagguaGCGGGCGUCGUagcgUUCGa -3'
miRNA:   3'- -CCGUCGCCAg------CGUCCGCGGCGg---AGGC- -5'
14644 5' -64.3 NC_003521.1 + 49578 0.73 0.292132
Target:  5'- cGC-GUGGgcCGC-GGCGCCGCCUCCu -3'
miRNA:   3'- cCGuCGCCa-GCGuCCGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 5540 0.73 0.3048
Target:  5'- cGGCAGcCGG-CGCGGcCGCCGCCaucguuguUCCGu -3'
miRNA:   3'- -CCGUC-GCCaGCGUCcGCGGCGG--------AGGC- -5'
14644 5' -64.3 NC_003521.1 + 101504 0.73 0.307383
Target:  5'- aGCGGCGGcCagacgcggccgaccaGCAGGCGCUGCagCUCCGu -3'
miRNA:   3'- cCGUCGCCaG---------------CGUCCGCGGCG--GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 166485 0.73 0.31129
Target:  5'- cGCAGCaG-CGCcauccagcgGGGCGCCGCgUCCGa -3'
miRNA:   3'- cCGUCGcCaGCG---------UCCGCGGCGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 137163 0.72 0.317885
Target:  5'- uGGCcGCGGcCGCAGcG-GCCGCCgCCGa -3'
miRNA:   3'- -CCGuCGCCaGCGUC-CgCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 234133 0.72 0.324584
Target:  5'- aGCAGCGcUCGCGGGCGCagGCC-CUGc -3'
miRNA:   3'- cCGUCGCcAGCGUCCGCGg-CGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 150674 0.74 0.251043
Target:  5'- cGGCGGCGG-CGCcgcugcugcuGGGUGCUGCUgcgCCGg -3'
miRNA:   3'- -CCGUCGCCaGCG----------UCCGCGGCGGa--GGC- -5'
14644 5' -64.3 NC_003521.1 + 6406 0.74 0.245577
Target:  5'- cGCGGCGG-CGaCGGGUcuuGCCGCCUCgGg -3'
miRNA:   3'- cCGUCGCCaGC-GUCCG---CGGCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 219151 0.74 0.245577
Target:  5'- aGGCAG-GGUaccaGCAGGCGCCGCagcguguUCCa -3'
miRNA:   3'- -CCGUCgCCAg---CGUCCGCGGCGg------AGGc -5'
14644 5' -64.3 NC_003521.1 + 140742 0.82 0.079625
Target:  5'- cGuCGGCGGUCG-AGGCGcCCGCCUCCGu -3'
miRNA:   3'- cC-GUCGCCAGCgUCCGC-GGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 73145 0.8 0.106528
Target:  5'- gGGCAGCGG-CgGC-GGCGCCGCCUCgGc -3'
miRNA:   3'- -CCGUCGCCaG-CGuCCGCGGCGGAGgC- -5'
14644 5' -64.3 NC_003521.1 + 106358 0.77 0.170555
Target:  5'- gGGCuGCGGUaGCGGGgaaccgccaucucCGCCGCCUCCu -3'
miRNA:   3'- -CCGuCGCCAgCGUCC-------------GCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 224023 0.77 0.174951
Target:  5'- gGGCccGGCGGUCgggGCGGGCGCCGUCgCCc -3'
miRNA:   3'- -CCG--UCGCCAG---CGUCCGCGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 46089 0.76 0.191795
Target:  5'- -cCGGC-GUCGCAGaccuuguaGCGCCGCCUCCGg -3'
miRNA:   3'- ccGUCGcCAGCGUC--------CGCGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 99706 0.76 0.196223
Target:  5'- gGGCGGCcgcuucugcaGGUCGCAGGCGUCGUCgcgcacccagCCGc -3'
miRNA:   3'- -CCGUCG----------CCAGCGUCCGCGGCGGa---------GGC- -5'
14644 5' -64.3 NC_003521.1 + 152759 0.76 0.20074
Target:  5'- gGGCAGCG--CGCGgaacGGCGUCGCCUCCu -3'
miRNA:   3'- -CCGUCGCcaGCGU----CCGCGGCGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 99004 0.75 0.228751
Target:  5'- aGGUAccGCGGUCGUcuuguagacgauGGCGCCGgCUCCGg -3'
miRNA:   3'- -CCGU--CGCCAGCGu-----------CCGCGGCgGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.