miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14644 5' -64.3 NC_003521.1 + 184783 0.66 0.681424
Target:  5'- gGGCAacGCgcgccuGGaCGCccuGGUgGCCGCCUCCGa -3'
miRNA:   3'- -CCGU--CG------CCaGCGu--CCG-CGGCGGAGGC- -5'
14644 5' -64.3 NC_003521.1 + 92085 0.66 0.681424
Target:  5'- gGGuCGGgGGgugCGCAgGGCGgUGCC-CCGg -3'
miRNA:   3'- -CC-GUCgCCa--GCGU-CCGCgGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 129285 0.66 0.679567
Target:  5'- uGGuCAGCuuguugaGGUCGUGGaacuugauggcguGCGCCGCCgCCGc -3'
miRNA:   3'- -CC-GUCG-------CCAGCGUC-------------CGCGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 153457 0.66 0.679567
Target:  5'- aGGcCAGCGGcUCGCAGGCcacguacacgcggauGCcCuugccgcgcagcugcGCCUCCa -3'
miRNA:   3'- -CC-GUCGCC-AGCGUCCG---------------CG-G---------------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 155341 0.66 0.672126
Target:  5'- cGGCGGgGG-CGCGGGCaCCGgCaCCa -3'
miRNA:   3'- -CCGUCgCCaGCGUCCGcGGCgGaGGc -5'
14644 5' -64.3 NC_003521.1 + 117485 0.66 0.672126
Target:  5'- cGGCcGCGG-CGCuGGgGCCGUCggugUUCGg -3'
miRNA:   3'- -CCGuCGCCaGCGuCCgCGGCGG----AGGC- -5'
14644 5' -64.3 NC_003521.1 + 198209 0.66 0.672126
Target:  5'- uGGCGGCGac----GGCGCCGCCggcggCCGu -3'
miRNA:   3'- -CCGUCGCcagcguCCGCGGCGGa----GGC- -5'
14644 5' -64.3 NC_003521.1 + 123711 0.66 0.672126
Target:  5'- aGGCGGCGGcugagcggCGgAGGCGgCCuCgUCCGc -3'
miRNA:   3'- -CCGUCGCCa-------GCgUCCGC-GGcGgAGGC- -5'
14644 5' -64.3 NC_003521.1 + 104091 0.66 0.672126
Target:  5'- cGGCAggacGCGGaagGCGGcGCGCUGCCagUCCu -3'
miRNA:   3'- -CCGU----CGCCag-CGUC-CGCGGCGG--AGGc -5'
14644 5' -64.3 NC_003521.1 + 77124 0.66 0.672126
Target:  5'- cGGCcucGUGGcCGCcguuGGCGCCGCuCUUgGa -3'
miRNA:   3'- -CCGu--CGCCaGCGu---CCGCGGCG-GAGgC- -5'
14644 5' -64.3 NC_003521.1 + 129215 0.66 0.672126
Target:  5'- uGGCGcGUGGUgGgCAguccGGCGCCGCUggCCa -3'
miRNA:   3'- -CCGU-CGCCAgC-GU----CCGCGGCGGa-GGc -5'
14644 5' -64.3 NC_003521.1 + 16042 0.66 0.672126
Target:  5'- cGCAcgacGUGGU-GCGGGCGCUGCUgcacaacugCCGg -3'
miRNA:   3'- cCGU----CGCCAgCGUCCGCGGCGGa--------GGC- -5'
14644 5' -64.3 NC_003521.1 + 123143 0.66 0.672126
Target:  5'- cGGCAGCGG-CGCgucggaaaagaaGGGCcggcgcaCCGUCUCgCGg -3'
miRNA:   3'- -CCGUCGCCaGCG------------UCCGc------GGCGGAG-GC- -5'
14644 5' -64.3 NC_003521.1 + 134503 0.66 0.672126
Target:  5'- uGGCGGauGagGCAGGCgaugcgcacgGCCGCCgCCu -3'
miRNA:   3'- -CCGUCgcCagCGUCCG----------CGGCGGaGGc -5'
14644 5' -64.3 NC_003521.1 + 132599 0.66 0.671194
Target:  5'- aGCGGCGG-CGUcGGCGUCcgcaacgGCUUCCa -3'
miRNA:   3'- cCGUCGCCaGCGuCCGCGG-------CGGAGGc -5'
14644 5' -64.3 NC_003521.1 + 165889 0.66 0.668398
Target:  5'- gGGCGGCGGguacaccaccccgCGCugccGGGCcgacuccaccGCCGCCaCCGu -3'
miRNA:   3'- -CCGUCGCCa------------GCG----UCCG----------CGGCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 216920 0.66 0.6628
Target:  5'- uGGCAGCGGagGCGGucgaccccauacGCuGuuGCC-CCGg -3'
miRNA:   3'- -CCGUCGCCagCGUC------------CG-CggCGGaGGC- -5'
14644 5' -64.3 NC_003521.1 + 163186 0.66 0.6628
Target:  5'- cGGCAGCGGacacggUGguGGCGgCgGCagcggcaguagCUCCGg -3'
miRNA:   3'- -CCGUCGCCa-----GCguCCGC-GgCG-----------GAGGC- -5'
14644 5' -64.3 NC_003521.1 + 16213 0.66 0.6628
Target:  5'- aGGUGGCGG-CGCcc-UGCCGCCUggCCGa -3'
miRNA:   3'- -CCGUCGCCaGCGuccGCGGCGGA--GGC- -5'
14644 5' -64.3 NC_003521.1 + 146900 0.66 0.653453
Target:  5'- gGGCAGCGGU---AGuCGCCGCUUgCCGc -3'
miRNA:   3'- -CCGUCGCCAgcgUCcGCGGCGGA-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.