miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1465 3' -55.7 NC_001335.1 + 29042 0.66 0.710364
Target:  5'- uGGCCGCaacggcUACAUCgUCAacgcgaUGGGCCGg -3'
miRNA:   3'- -CCGGUGa-----AUGUAGgAGUgg----GCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 9335 0.66 0.699623
Target:  5'- uGCC-CUcaGCGUCCUCGaacgccaggaUCCGGGCCa -3'
miRNA:   3'- cCGGuGAa-UGUAGGAGU----------GGGCUCGGc -5'
1465 3' -55.7 NC_001335.1 + 50544 0.66 0.677958
Target:  5'- uGGCCGuc-AUGUCUUCGCCCcAGUCGg -3'
miRNA:   3'- -CCGGUgaaUGUAGGAGUGGGcUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 46835 0.66 0.656119
Target:  5'- -cCCuuGCUUGCucgCCUCgACCUGGGCCa -3'
miRNA:   3'- ccGG--UGAAUGua-GGAG-UGGGCUCGGc -5'
1465 3' -55.7 NC_001335.1 + 5369 0.66 0.656119
Target:  5'- gGGuCUACcagaGCAUCCUCGCCgacauCGAGCgGg -3'
miRNA:   3'- -CC-GGUGaa--UGUAGGAGUGG-----GCUCGgC- -5'
1465 3' -55.7 NC_001335.1 + 24815 0.66 0.656119
Target:  5'- cGCgGCaUACAUCCUgGCguggaCGAGCCu -3'
miRNA:   3'- cCGgUGaAUGUAGGAgUGg----GCUCGGc -5'
1465 3' -55.7 NC_001335.1 + 12684 0.67 0.645162
Target:  5'- aGCCGC-UGCGUCggCGacguUCCGGGCCGa -3'
miRNA:   3'- cCGGUGaAUGUAGgaGU----GGGCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 18893 0.67 0.612258
Target:  5'- cGGCCACggcgGCGUCCagaACgaCGGGUCGa -3'
miRNA:   3'- -CCGGUGaa--UGUAGGag-UGg-GCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 50501 0.67 0.612258
Target:  5'- aGGCCAUcgGCA-CCUCguaGCuuGuGCCGa -3'
miRNA:   3'- -CCGGUGaaUGUaGGAG---UGggCuCGGC- -5'
1465 3' -55.7 NC_001335.1 + 9113 0.67 0.605688
Target:  5'- cGGCgGCgcGCAUCCUCauguugaugcaggcgACCgcCGAGCUGa -3'
miRNA:   3'- -CCGgUGaaUGUAGGAG---------------UGG--GCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 31584 0.68 0.557875
Target:  5'- aGGaCCGCUUccACGUCgUgGCUggCGAGCCGa -3'
miRNA:   3'- -CC-GGUGAA--UGUAGgAgUGG--GCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 20849 0.68 0.547143
Target:  5'- cGCCGCUccgUACAUCUUCGCgCCaaAGCCc -3'
miRNA:   3'- cCGGUGA---AUGUAGGAGUG-GGc-UCGGc -5'
1465 3' -55.7 NC_001335.1 + 17959 0.68 0.547143
Target:  5'- aGUCGCUUGCGcUCCUCuuCgaGAGCCGc -3'
miRNA:   3'- cCGGUGAAUGU-AGGAGu-GggCUCGGC- -5'
1465 3' -55.7 NC_001335.1 + 11033 0.69 0.494613
Target:  5'- uGGCCucgUACucggCCuUCACUCGAGCCu -3'
miRNA:   3'- -CCGGugaAUGua--GG-AGUGGGCUCGGc -5'
1465 3' -55.7 NC_001335.1 + 11002 0.75 0.218712
Target:  5'- uGCCGCUUcuacgGCGUCCUucuucgcCACCCGAGCgGc -3'
miRNA:   3'- cCGGUGAA-----UGUAGGA-------GUGGGCUCGgC- -5'
1465 3' -55.7 NC_001335.1 + 13768 1.1 0.000737
Target:  5'- aGGCCACUUACAUCCUCACCCGAGCCGc -3'
miRNA:   3'- -CCGGUGAAUGUAGGAGUGGGCUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.