miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14650 3' -48.4 NC_003525.1 + 61506 0.66 0.982333
Target:  5'- uGCUCcggaacaACUGGCgcugCGCCGGucgcauucugaAGGUGACCa -3'
miRNA:   3'- -UGAG-------UGACUGaa--GUGGCU-----------UUCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 19634 0.66 0.977714
Target:  5'- -aUCACUGACagccUUACCGGuuGCcuucaGACCu -3'
miRNA:   3'- ugAGUGACUGa---AGUGGCUuuCG-----UUGG- -5'
14650 3' -48.4 NC_003525.1 + 19520 0.67 0.965179
Target:  5'- -gUUACUGAUauugUCGguaaagguCUGAAGGCAACCg -3'
miRNA:   3'- ugAGUGACUGa---AGU--------GGCUUUCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 56208 0.67 0.961396
Target:  5'- cGC-CugUGGCUUCugcACCGgAAGGCGAUg -3'
miRNA:   3'- -UGaGugACUGAAG---UGGC-UUUCGUUGg -5'
14650 3' -48.4 NC_003525.1 + 1223 0.68 0.938232
Target:  5'- aGCUCAUgaGCUgaUCAUC-AAAGCAGCCu -3'
miRNA:   3'- -UGAGUGacUGA--AGUGGcUUUCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 16898 0.68 0.938232
Target:  5'- cCUU-CUGACcagaACCGAGAGCAGCa -3'
miRNA:   3'- uGAGuGACUGaag-UGGCUUUCGUUGg -5'
14650 3' -48.4 NC_003525.1 + 48651 0.69 0.926902
Target:  5'- cGCUCACUGGCUa-ACUGAGGuCGACg -3'
miRNA:   3'- -UGAGUGACUGAagUGGCUUUcGUUGg -5'
14650 3' -48.4 NC_003525.1 + 50701 0.69 0.926902
Target:  5'- gAC-CGCUGGCgagaACuCGAAggGGCAACCg -3'
miRNA:   3'- -UGaGUGACUGaag-UG-GCUU--UCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 19963 0.7 0.885752
Target:  5'- uACUCugaGCUGGCgcagUCACCGAAauuucAGCAGa- -3'
miRNA:   3'- -UGAG---UGACUGa---AGUGGCUU-----UCGUUgg -5'
14650 3' -48.4 NC_003525.1 + 33774 0.7 0.885752
Target:  5'- uGCUCACUGugUggcggaaaUCAUgGcAAAGCcGCCa -3'
miRNA:   3'- -UGAGUGACugA--------AGUGgC-UUUCGuUGG- -5'
14650 3' -48.4 NC_003525.1 + 8014 0.71 0.824191
Target:  5'- gACggCGCUGACaguUUCACCGGAugcgcucAGCGGCa -3'
miRNA:   3'- -UGa-GUGACUG---AAGUGGCUU-------UCGUUGg -5'
14650 3' -48.4 NC_003525.1 + 8543 0.73 0.753818
Target:  5'- cGCUgCugUGACUgCACgGGucGCAGCCu -3'
miRNA:   3'- -UGA-GugACUGAaGUGgCUuuCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 57159 0.75 0.664486
Target:  5'- gGCUgACUGACUggCGCUGAuuuucucAGCGGCCc -3'
miRNA:   3'- -UGAgUGACUGAa-GUGGCUu------UCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 4256 0.76 0.561653
Target:  5'- cGCUCACUGAacgUUUCGCUG-AAGUGGCCc -3'
miRNA:   3'- -UGAGUGACU---GAAGUGGCuUUCGUUGG- -5'
14650 3' -48.4 NC_003525.1 + 4383 1.13 0.003191
Target:  5'- gACUCACUGACUUCACCGAAAGCAACCu -3'
miRNA:   3'- -UGAGUGACUGAAGUGGCUUUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.