miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14651 3' -58.1 NC_003525.1 + 5315 0.66 0.625545
Target:  5'- gUCCUGuACGuCACGCCGcgucaguggaAUGACUGGUa -3'
miRNA:   3'- -AGGGC-UGCcGUGUGGU----------UGCUGACCGc -5'
14651 3' -58.1 NC_003525.1 + 13641 0.66 0.625545
Target:  5'- uUUCCGuucugaauaACGGCACuCCGGauaACUGGCGa -3'
miRNA:   3'- -AGGGC---------UGCCGUGuGGUUgc-UGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 57932 0.66 0.61491
Target:  5'- aCCaucACGGUAUGCCGugGugUGGUu -3'
miRNA:   3'- aGGgc-UGCCGUGUGGUugCugACCGc -5'
14651 3' -58.1 NC_003525.1 + 238 0.66 0.604289
Target:  5'- -gCUGACGGCACAggauuauaaauuCCAuuuuuACGcCUGGUGg -3'
miRNA:   3'- agGGCUGCCGUGU------------GGU-----UGCuGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 46795 0.66 0.597926
Target:  5'- uUCCUgucaugGGCGGCAgACCucuaaaucguguucaGGCG-CUGGCGa -3'
miRNA:   3'- -AGGG------CUGCCGUgUGG---------------UUGCuGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 37930 0.67 0.572591
Target:  5'- cUCCCGAUGGUuuauGCAgUGACGGCaacGGCc -3'
miRNA:   3'- -AGGGCUGCCG----UGUgGUUGCUGa--CCGc -5'
14651 3' -58.1 NC_003525.1 + 35427 0.67 0.562106
Target:  5'- -gCUGGCugugcaaaagaGGCGCGCaagGAUGGCUGGCGa -3'
miRNA:   3'- agGGCUG-----------CCGUGUGg--UUGCUGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 55696 0.67 0.541301
Target:  5'- aCCUGGCggauauGGCAgGCCAguGCGucgguggcucuGCUGGCGg -3'
miRNA:   3'- aGGGCUG------CCGUgUGGU--UGC-----------UGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 1845 0.68 0.487568
Target:  5'- uUCCCGGgaaUGGCucagguuaucgauuAUGCCAuugAUGACUGGCGu -3'
miRNA:   3'- -AGGGCU---GCCG--------------UGUGGU---UGCUGACCGC- -5'
14651 3' -58.1 NC_003525.1 + 55467 0.69 0.461171
Target:  5'- -gCCGAUGGCACAUaCAgugacGCGAgUGGUGc -3'
miRNA:   3'- agGGCUGCCGUGUG-GU-----UGCUgACCGC- -5'
14651 3' -58.1 NC_003525.1 + 6926 1.09 0.000633
Target:  5'- cUCCCGACGGCACACCAACGACUGGCGg -3'
miRNA:   3'- -AGGGCUGCCGUGUGGUUGCUGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.