Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 8573 | 0.66 | 0.497382 |
Target: 5'- -gCCAGGCUgGCGCaggagAGCG-CCGGa- -3' miRNA: 3'- aaGGUCCGAaCGCGg----UCGUaGGCCag -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 61417 | 0.66 | 0.497382 |
Target: 5'- -aCC-GGCgcaGCGCCAGUuguUCCGGa- -3' miRNA: 3'- aaGGuCCGaa-CGCGGUCGu--AGGCCag -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 8661 | 0.66 | 0.477093 |
Target: 5'- cUCCGGcGCUcuccUGCGCCAGC--CUGGcCu -3' miRNA: 3'- aAGGUC-CGA----ACGCGGUCGuaGGCCaG- -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 9898 | 0.66 | 0.477093 |
Target: 5'- gUCC-GGUgaugagUGCGCCAucuGUAUCCGGa- -3' miRNA: 3'- aAGGuCCGa-----ACGCGGU---CGUAGGCCag -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 25653 | 0.68 | 0.377259 |
Target: 5'- uUUCCuGGUccUUGCGCuCugcaaucguccgcauGGUAUCCGGUCu -3' miRNA: 3'- -AAGGuCCG--AACGCG-G---------------UCGUAGGCCAG- -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 23059 | 0.69 | 0.324964 |
Target: 5'- aUCCAGaGaauggaaccauucgUGCGCCAGCGcacCCGGUCc -3' miRNA: 3'- aAGGUC-Cga------------ACGCGGUCGUa--GGCCAG- -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 44428 | 0.77 | 0.092776 |
Target: 5'- --aCAGGCUUGCGCUAGCcgCUGGg- -3' miRNA: 3'- aagGUCCGAACGCGGUCGuaGGCCag -5' |
|||||||
14652 | 5' | -59.2 | NC_003525.1 | + | 7511 | 1.06 | 0.00053 |
Target: 5'- uUUCCAGGCUUGCGCCAGCAUCCGGUCu -3' miRNA: 3'- -AAGGUCCGAACGCGGUCGUAGGCCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home