miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14652 5' -59.2 NC_003525.1 + 8573 0.66 0.497382
Target:  5'- -gCCAGGCUgGCGCaggagAGCG-CCGGa- -3'
miRNA:   3'- aaGGUCCGAaCGCGg----UCGUaGGCCag -5'
14652 5' -59.2 NC_003525.1 + 61417 0.66 0.497382
Target:  5'- -aCC-GGCgcaGCGCCAGUuguUCCGGa- -3'
miRNA:   3'- aaGGuCCGaa-CGCGGUCGu--AGGCCag -5'
14652 5' -59.2 NC_003525.1 + 8661 0.66 0.477093
Target:  5'- cUCCGGcGCUcuccUGCGCCAGC--CUGGcCu -3'
miRNA:   3'- aAGGUC-CGA----ACGCGGUCGuaGGCCaG- -5'
14652 5' -59.2 NC_003525.1 + 9898 0.66 0.477093
Target:  5'- gUCC-GGUgaugagUGCGCCAucuGUAUCCGGa- -3'
miRNA:   3'- aAGGuCCGa-----ACGCGGU---CGUAGGCCag -5'
14652 5' -59.2 NC_003525.1 + 25653 0.68 0.377259
Target:  5'- uUUCCuGGUccUUGCGCuCugcaaucguccgcauGGUAUCCGGUCu -3'
miRNA:   3'- -AAGGuCCG--AACGCG-G---------------UCGUAGGCCAG- -5'
14652 5' -59.2 NC_003525.1 + 23059 0.69 0.324964
Target:  5'- aUCCAGaGaauggaaccauucgUGCGCCAGCGcacCCGGUCc -3'
miRNA:   3'- aAGGUC-Cga------------ACGCGGUCGUa--GGCCAG- -5'
14652 5' -59.2 NC_003525.1 + 44428 0.77 0.092776
Target:  5'- --aCAGGCUUGCGCUAGCcgCUGGg- -3'
miRNA:   3'- aagGUCCGAACGCGGUCGuaGGCCag -5'
14652 5' -59.2 NC_003525.1 + 7511 1.06 0.00053
Target:  5'- uUUCCAGGCUUGCGCCAGCAUCCGGUCu -3'
miRNA:   3'- -AAGGUCCGAACGCGGUCGUAGGCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.