miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14657 5' -56.3 NC_003525.1 + 48115 0.66 0.684819
Target:  5'- uUCAGCCGccgCAGCaacuGAu-GGUGCCCAUg -3'
miRNA:   3'- -GGUCGGUa--GUCGg---CUuuCCGUGGGUG- -5'
14657 5' -56.3 NC_003525.1 + 18464 0.66 0.673993
Target:  5'- aCCAGCg--CAGCagGAAGGGUACgUACu -3'
miRNA:   3'- -GGUCGguaGUCGg-CUUUCCGUGgGUG- -5'
14657 5' -56.3 NC_003525.1 + 26797 0.66 0.673993
Target:  5'- aCCGGCag-CAcgggacGCCGucAGGuCACCCGCc -3'
miRNA:   3'- -GGUCGguaGU------CGGCuuUCC-GUGGGUG- -5'
14657 5' -56.3 NC_003525.1 + 49295 0.66 0.652233
Target:  5'- -aGGCCAaaGGCgGuAAGGCACgCGCg -3'
miRNA:   3'- ggUCGGUagUCGgCuUUCCGUGgGUG- -5'
14657 5' -56.3 NC_003525.1 + 1879 0.66 0.651142
Target:  5'- uCCAGCggcgacgCAUCAGCC-AucGGCAgUCACu -3'
miRNA:   3'- -GGUCG-------GUAGUCGGcUuuCCGUgGGUG- -5'
14657 5' -56.3 NC_003525.1 + 55062 0.66 0.641321
Target:  5'- aCCAGCUgucgaaAUCAGCgCacuaccauAAGGCugCCACc -3'
miRNA:   3'- -GGUCGG------UAGUCG-Gcu------UUCCGugGGUG- -5'
14657 5' -56.3 NC_003525.1 + 50859 0.67 0.616207
Target:  5'- uUCAGCCuucuggucuucaagGUCGGCCGcAAGGCGCa--- -3'
miRNA:   3'- -GGUCGG--------------UAGUCGGCuUUCCGUGggug -5'
14657 5' -56.3 NC_003525.1 + 20599 0.67 0.597685
Target:  5'- gCAGCuCAUC-GCCGGGAaGCugCCAg -3'
miRNA:   3'- gGUCG-GUAGuCGGCUUUcCGugGGUg -5'
14657 5' -56.3 NC_003525.1 + 19715 0.67 0.586826
Target:  5'- uUCGGUCAUCGGCguauucagcgcaCGAAcuGCACCCGg -3'
miRNA:   3'- -GGUCGGUAGUCG------------GCUUucCGUGGGUg -5'
14657 5' -56.3 NC_003525.1 + 57880 0.71 0.395187
Target:  5'- uCUGGCCAUCuGCCGuGGAGcCACCCGg -3'
miRNA:   3'- -GGUCGGUAGuCGGC-UUUCcGUGGGUg -5'
14657 5' -56.3 NC_003525.1 + 15895 0.71 0.372168
Target:  5'- cCCcGUCAacugguugcugagguUCAGCCGAuauGGCACCCGu -3'
miRNA:   3'- -GGuCGGU---------------AGUCGGCUuu-CCGUGGGUg -5'
14657 5' -56.3 NC_003525.1 + 9709 0.73 0.3118
Target:  5'- aCCGGaCC-UCaggGGCCGAAGGGCgACCCGg -3'
miRNA:   3'- -GGUC-GGuAG---UCGGCUUUCCG-UGGGUg -5'
14657 5' -56.3 NC_003525.1 + 57084 0.74 0.24247
Target:  5'- gCCAGUCAgUCAGCCGGAAGcaaACCCGa -3'
miRNA:   3'- -GGUCGGU-AGUCGGCUUUCcg-UGGGUg -5'
14657 5' -56.3 NC_003525.1 + 54578 0.76 0.186462
Target:  5'- aCCAgGCCGaacUCA-CCGGGAGGCACCCGg -3'
miRNA:   3'- -GGU-CGGU---AGUcGGCUUUCCGUGGGUg -5'
14657 5' -56.3 NC_003525.1 + 15666 1.12 0.000544
Target:  5'- uCCAGCCAUCAGCCGAAAGGCACCCACg -3'
miRNA:   3'- -GGUCGGUAGUCGGCUUUCCGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.