miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14659 5' -54.5 NC_003525.1 + 9592 0.66 0.804688
Target:  5'- uGCCGGUccccguucgccGGuuGCCCCgacaGgGCCGGUGUc -3'
miRNA:   3'- -CGGUUA-----------UCggCGGGGg---CaUGGUUACG- -5'
14659 5' -54.5 NC_003525.1 + 56283 0.66 0.804688
Target:  5'- cGCCAcUGGCUGaccauCCCUGUACUuucagGCu -3'
miRNA:   3'- -CGGUuAUCGGCg----GGGGCAUGGuua--CG- -5'
14659 5' -54.5 NC_003525.1 + 20331 0.66 0.795076
Target:  5'- cGUgAAUAGCCGCCCugcgCCGcAUUAAUcGCc -3'
miRNA:   3'- -CGgUUAUCGGCGGG----GGCaUGGUUA-CG- -5'
14659 5' -54.5 NC_003525.1 + 58091 0.66 0.782329
Target:  5'- aGUCAGUGGCacucugauguucuuCGCCaCCCaUGCCAGcGCc -3'
miRNA:   3'- -CGGUUAUCG--------------GCGG-GGGcAUGGUUaCG- -5'
14659 5' -54.5 NC_003525.1 + 2187 0.66 0.775355
Target:  5'- gGCCAcacuuuauuGUGGaUCGCCCCUGUA---GUGCu -3'
miRNA:   3'- -CGGU---------UAUC-GGCGGGGGCAUgguUACG- -5'
14659 5' -54.5 NC_003525.1 + 24747 0.66 0.755043
Target:  5'- cGCaaggGGCCGUauuacUCCCGUACCA--GCa -3'
miRNA:   3'- -CGguuaUCGGCG-----GGGGCAUGGUuaCG- -5'
14659 5' -54.5 NC_003525.1 + 15511 0.66 0.755043
Target:  5'- cGCCAG-AGCCGgaaCCUUCGUAagccacauCCAGUGUa -3'
miRNA:   3'- -CGGUUaUCGGC---GGGGGCAU--------GGUUACG- -5'
14659 5' -54.5 NC_003525.1 + 59584 0.67 0.723668
Target:  5'- aGCCAccGGCacCGCCCgCGUGgaUAAUGCa -3'
miRNA:   3'- -CGGUuaUCG--GCGGGgGCAUg-GUUACG- -5'
14659 5' -54.5 NC_003525.1 + 3330 0.68 0.658772
Target:  5'- uCCAcAUAacGCUGCCCCUGUGUCAggGCg -3'
miRNA:   3'- cGGU-UAU--CGGCGGGGGCAUGGUuaCG- -5'
14659 5' -54.5 NC_003525.1 + 17580 0.71 0.476501
Target:  5'- uGCCAccaguUGGCCGCCaacacucaguuUCUGUcuuGCCGGUGCa -3'
miRNA:   3'- -CGGUu----AUCGGCGG-----------GGGCA---UGGUUACG- -5'
14659 5' -54.5 NC_003525.1 + 21678 0.82 0.111316
Target:  5'- aGCCGGUAGCC-CUUCaCGUACCGGUGCu -3'
miRNA:   3'- -CGGUUAUCGGcGGGG-GCAUGGUUACG- -5'
14659 5' -54.5 NC_003525.1 + 17776 1.13 0.000694
Target:  5'- cGCCAAUAGCCGCCCCCGUACCAAUGCc -3'
miRNA:   3'- -CGGUUAUCGGCGGGGGCAUGGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.