miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1466 3' -59.4 NC_001335.1 + 41389 0.66 0.483179
Target:  5'- uAGGCGaGGACGAacgccgacuucccGGuGCCggggCCGGCGCAg -3'
miRNA:   3'- -UCCGC-CCUGCU-------------CCuUGG----GGUUGCGUg -5'
1466 3' -59.4 NC_001335.1 + 2567 0.66 0.451763
Target:  5'- cGGCGGGAacuuagagcccgGAGGAagcgaccACCCgAACGC-Ca -3'
miRNA:   3'- uCCGCCCUg-----------CUCCU-------UGGGgUUGCGuG- -5'
1466 3' -59.4 NC_001335.1 + 47547 0.67 0.41688
Target:  5'- aGGGCGGuGGCcacaucGGAGCUguggCCAAUGCACu -3'
miRNA:   3'- -UCCGCC-CUGcu----CCUUGG----GGUUGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 38934 0.68 0.388953
Target:  5'- uGGGCuGGGCGAGGGACUgCAucgaguucuucaaACGgGCc -3'
miRNA:   3'- -UCCGcCCUGCUCCUUGGgGU-------------UGCgUG- -5'
1466 3' -59.4 NC_001335.1 + 15545 0.69 0.339306
Target:  5'- gGGGCuGGAcCGAGG-ACCgCuACGCGCu -3'
miRNA:   3'- -UCCGcCCU-GCUCCuUGGgGuUGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 24936 0.69 0.326659
Target:  5'- cGGCGGGcaguCGGGGcuuccuacccaucccGGCCCaCcACGCACg -3'
miRNA:   3'- uCCGCCCu---GCUCC---------------UUGGG-GuUGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 2197 0.69 0.323553
Target:  5'- gGGGCGGuGGCGAGGGucucgagauCCUCAAC-UACg -3'
miRNA:   3'- -UCCGCC-CUGCUCCUu--------GGGGUUGcGUG- -5'
1466 3' -59.4 NC_001335.1 + 10026 0.69 0.323553
Target:  5'- uGGGCaGGGACuucuacGACuCCCAACGCGCa -3'
miRNA:   3'- -UCCG-CCCUGcucc--UUG-GGGUUGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 10281 0.72 0.200818
Target:  5'- aGGGCuGGGCGAGGGucGCCaCCGG-GCGCg -3'
miRNA:   3'- -UCCGcCCUGCUCCU--UGG-GGUUgCGUG- -5'
1466 3' -59.4 NC_001335.1 + 24090 0.73 0.185616
Target:  5'- uGGCGGcGGCGGGGcugGugCCCAGgucucCGCACa -3'
miRNA:   3'- uCCGCC-CUGCUCC---UugGGGUU-----GCGUG- -5'
1466 3' -59.4 NC_001335.1 + 40974 0.73 0.171439
Target:  5'- cGGGcCGGuGACGugguGGAGCCCgaCGACGCAUg -3'
miRNA:   3'- -UCC-GCC-CUGCu---CCUUGGG--GUUGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 40368 0.78 0.073099
Target:  5'- cAGGCGGGGCGcgcaugccuggGGGGGCUUCAcuACGCACa -3'
miRNA:   3'- -UCCGCCCUGC-----------UCCUUGGGGU--UGCGUG- -5'
1466 3' -59.4 NC_001335.1 + 13963 0.97 0.00303
Target:  5'- uAGGCGGGAC-AGGAACCCCAACGCACc -3'
miRNA:   3'- -UCCGCCCUGcUCCUUGGGGUUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.