miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1466 5' -53.8 NC_001335.1 + 23297 0.66 0.793068
Target:  5'- --uCGUUGUCGGUGaUCGucacucGGGUGACCg -3'
miRNA:   3'- uguGCGACGGCCACcAGC------UUUACUGG- -5'
1466 5' -53.8 NC_001335.1 + 48783 0.66 0.793068
Target:  5'- -gGCGCaaGCCucgaGGUGGUCGAGcagGACg -3'
miRNA:   3'- ugUGCGa-CGG----CCACCAGCUUua-CUGg -5'
1466 5' -53.8 NC_001335.1 + 29007 0.66 0.783136
Target:  5'- gGCG-GCUGCCGGUGGacagcUCGcg--GACa -3'
miRNA:   3'- -UGUgCGACGGCCACC-----AGCuuuaCUGg -5'
1466 5' -53.8 NC_001335.1 + 9176 0.66 0.783136
Target:  5'- uGCGCGCcGCCGcGUcGGUCauc--GACCg -3'
miRNA:   3'- -UGUGCGaCGGC-CA-CCAGcuuuaCUGG- -5'
1466 5' -53.8 NC_001335.1 + 12128 0.66 0.773044
Target:  5'- gGCgACGUggucGCUcaGGaUGGUCGGAcgGGCCa -3'
miRNA:   3'- -UG-UGCGa---CGG--CC-ACCAGCUUuaCUGG- -5'
1466 5' -53.8 NC_001335.1 + 46769 0.67 0.752428
Target:  5'- gGCaACGUacuUGCCGGUGa-CGuAGGUGACCc -3'
miRNA:   3'- -UG-UGCG---ACGGCCACcaGC-UUUACUGG- -5'
1466 5' -53.8 NC_001335.1 + 25889 0.67 0.731311
Target:  5'- -gAUGgUGCCcuuGGUGGUCGAc--GGCCu -3'
miRNA:   3'- ugUGCgACGG---CCACCAGCUuuaCUGG- -5'
1466 5' -53.8 NC_001335.1 + 45265 0.67 0.710874
Target:  5'- gAC-CGCccGCCaGGUGGUCGAGuucgagcuggcaagGGCCg -3'
miRNA:   3'- -UGuGCGa-CGG-CCACCAGCUUua------------CUGG- -5'
1466 5' -53.8 NC_001335.1 + 42263 0.67 0.70979
Target:  5'- uGCACGC-GCUGGUGaUCGAGcuguacGGCCc -3'
miRNA:   3'- -UGUGCGaCGGCCACcAGCUUua----CUGG- -5'
1466 5' -53.8 NC_001335.1 + 34857 0.68 0.698907
Target:  5'- --gUGCUGCCGGcaGGUCGGcaucugugGGCCu -3'
miRNA:   3'- uguGCGACGGCCa-CCAGCUuua-----CUGG- -5'
1466 5' -53.8 NC_001335.1 + 22982 0.68 0.687958
Target:  5'- aACACGCcGUCGGUgaugccgacGGUCGGAGcguugucguUGACg -3'
miRNA:   3'- -UGUGCGaCGGCCA---------CCAGCUUU---------ACUGg -5'
1466 5' -53.8 NC_001335.1 + 16009 0.68 0.654827
Target:  5'- cAUGCGCUugaaGUCGGccuUGGccugggccgcaUCGAGAUGACCg -3'
miRNA:   3'- -UGUGCGA----CGGCC---ACC-----------AGCUUUACUGG- -5'
1466 5' -53.8 NC_001335.1 + 3708 0.69 0.629281
Target:  5'- -gGCGCUcguucgaugagGUCGGUgucgucacguucgcGGUCGAcGUGACCa -3'
miRNA:   3'- ugUGCGA-----------CGGCCA--------------CCAGCUuUACUGG- -5'
1466 5' -53.8 NC_001335.1 + 15100 0.69 0.621503
Target:  5'- cCGCGaaG-CGGUGGUCGAGGUGuuCa -3'
miRNA:   3'- uGUGCgaCgGCCACCAGCUUUACugG- -5'
1466 5' -53.8 NC_001335.1 + 23923 0.69 0.621503
Target:  5'- gGCGucCGCUGUCGGaUGGUCaGGuuUGACg -3'
miRNA:   3'- -UGU--GCGACGGCC-ACCAG-CUuuACUGg -5'
1466 5' -53.8 NC_001335.1 + 32115 0.69 0.610401
Target:  5'- gGCA-GUUGCCGGguucGGUCGGuggaacGACCg -3'
miRNA:   3'- -UGUgCGACGGCCa---CCAGCUuua---CUGG- -5'
1466 5' -53.8 NC_001335.1 + 51821 0.7 0.555358
Target:  5'- cACGgGCUGCCGGgacuGUCcagcGUGACCa -3'
miRNA:   3'- -UGUgCGACGGCCac--CAGcuu-UACUGG- -5'
1466 5' -53.8 NC_001335.1 + 34533 0.7 0.533719
Target:  5'- gGCugGgCUGCUGcGcUGGUCGAucUGAUCg -3'
miRNA:   3'- -UGugC-GACGGC-C-ACCAGCUuuACUGG- -5'
1466 5' -53.8 NC_001335.1 + 20550 0.72 0.450731
Target:  5'- -gGCGCgGUCGGUGGagCGAu-UGACCu -3'
miRNA:   3'- ugUGCGaCGGCCACCa-GCUuuACUGG- -5'
1466 5' -53.8 NC_001335.1 + 13997 1.13 0.000802
Target:  5'- cACACGCUGCCGGUGGUCGAAAUGACCg -3'
miRNA:   3'- -UGUGCGACGGCCACCAGCUUUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.