miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14660 3' -53.4 NC_003525.1 + 2709 0.66 0.834495
Target:  5'- cCACCAggUUACUGAUAGCCacGCCuGa -3'
miRNA:   3'- cGUGGU--AGUGACUGUCGGaaUGGcCa -5'
14660 3' -53.4 NC_003525.1 + 48027 0.67 0.796871
Target:  5'- gGCACCAUCaguuGCUGcgGCGGCUgaaaaauggaACCGGa -3'
miRNA:   3'- -CGUGGUAG----UGAC--UGUCGGaa--------UGGCCa -5'
14660 3' -53.4 NC_003525.1 + 56598 0.67 0.786999
Target:  5'- gGCAUa--CGCUGGCuuuccGCUUUGCCGGg -3'
miRNA:   3'- -CGUGguaGUGACUGu----CGGAAUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 8007 0.67 0.776962
Target:  5'- uUACCcugacggCGCUGACAGUUUcACCGGa -3'
miRNA:   3'- cGUGGua-----GUGACUGUCGGAaUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 51288 0.67 0.776962
Target:  5'- aGCACCAcCACUGAUuugAGaa-UGCCGGg -3'
miRNA:   3'- -CGUGGUaGUGACUG---UCggaAUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 47073 0.68 0.735403
Target:  5'- cGUGCCAUUuuaGCUG-CGGCCUgauuuaUGCUGGUu -3'
miRNA:   3'- -CGUGGUAG---UGACuGUCGGA------AUGGCCA- -5'
14660 3' -53.4 NC_003525.1 + 56672 0.68 0.707434
Target:  5'- aCACCGUucaCGCUGACGcagucaccggucaguGCCUUugCGGc -3'
miRNA:   3'- cGUGGUA---GUGACUGU---------------CGGAAugGCCa -5'
14660 3' -53.4 NC_003525.1 + 207 0.69 0.681159
Target:  5'- uGCAuUCAUCAgaGACGGCauuaagcgUACCGGUu -3'
miRNA:   3'- -CGU-GGUAGUgaCUGUCGga------AUGGCCA- -5'
14660 3' -53.4 NC_003525.1 + 12493 0.69 0.636833
Target:  5'- aUACCAUCAcCUGcCAGUUUUGcCCGGUu -3'
miRNA:   3'- cGUGGUAGU-GACuGUCGGAAU-GGCCA- -5'
14660 3' -53.4 NC_003525.1 + 22444 0.7 0.624603
Target:  5'- aGCACCGUCACcggaUGACAaaauccGCUuugacguUUACCGGa -3'
miRNA:   3'- -CGUGGUAGUG----ACUGU------CGG-------AAUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 9751 0.72 0.50262
Target:  5'- cGCACCuguuucuccuuucgGUCcCUGugGGCC-UGCCGGg -3'
miRNA:   3'- -CGUGG--------------UAGuGACugUCGGaAUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 5453 0.73 0.425001
Target:  5'- -aACCAUCAuCUGGuucCAGuCCUUACCGGa -3'
miRNA:   3'- cgUGGUAGU-GACU---GUC-GGAAUGGCCa -5'
14660 3' -53.4 NC_003525.1 + 19640 1.09 0.00172
Target:  5'- gGCACCAUCACUGACAGCCUUACCGGUu -3'
miRNA:   3'- -CGUGGUAGUGACUGUCGGAAUGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.