Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 27816 | 0.66 | 0.981541 |
|
Target: 5'- aUACCGGCA--AUCAG-AAUUGCGg- -3' miRNA: 3'- aAUGGCUGUuaUAGUCaUUGGCGCaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 48725 | 0.67 | 0.973417 |
|
Target: 5'- -cACCGuacaGCAAUAUCAG--GCCGUGg- -3' miRNA: 3'- aaUGGC----UGUUAUAGUCauUGGCGCaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 1533 | 0.67 | 0.970206 |
|
Target: 5'- gUUAUgGAUAGUcAUCGGcUGACCGCGa- -3' miRNA: 3'- -AAUGgCUGUUA-UAGUC-AUUGGCGCaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 56091 | 0.67 | 0.966727 |
|
Target: 5'- -cAUCGACAGUAUCAGagGugCGCc-- -3' miRNA: 3'- aaUGGCUGUUAUAGUCa-UugGCGcaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 47771 | 0.67 | 0.958928 |
|
Target: 5'- cUGCCGcACGAugcUAUCcgcGUGACCGUGUUc -3' miRNA: 3'- aAUGGC-UGUU---AUAGu--CAUUGGCGCAA- -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 1987 | 0.69 | 0.922142 |
|
Target: 5'- -gGCUGGCcu--UCAGUAACCGUGg- -3' miRNA: 3'- aaUGGCUGuuauAGUCAUUGGCGCaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 27450 | 0.71 | 0.861552 |
|
Target: 5'- aUUGCCGugGA--UCGGUuuAACCGCGa- -3' miRNA: 3'- -AAUGGCugUUauAGUCA--UUGGCGCaa -5' |
|||||||
| 14660 | 5' | -47.7 | NC_003525.1 | + | 19601 | 1.03 | 0.01435 |
|
Target: 5'- uUUACCGACAAUAUCAGUAACCGCGUUu -3' miRNA: 3'- -AAUGGCUGUUAUAGUCAUUGGCGCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home