miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14661 5' -59 NC_003525.1 + 51477 0.66 0.479063
Target:  5'- gGGaUGCCGGacauuaccggacaaCUGCuGCG-GCACCUCAa -3'
miRNA:   3'- -CCaACGGUC--------------GACG-CGCgCGUGGAGUa -5'
14661 5' -59 NC_003525.1 + 48364 0.67 0.414521
Target:  5'- cGUUGUCAuGCUugGCGUGCGUACCagCAa -3'
miRNA:   3'- cCAACGGU-CGA--CGCGCGCGUGGa-GUa -5'
14661 5' -59 NC_003525.1 + 35838 0.68 0.396312
Target:  5'- --aUGCCAGCgGCGCGCuCgGCUUCAc -3'
miRNA:   3'- ccaACGGUCGaCGCGCGcG-UGGAGUa -5'
14661 5' -59 NC_003525.1 + 20076 0.7 0.298419
Target:  5'- uGUUGCCgaugAGgUGCGCGCGCAgCUgGc -3'
miRNA:   3'- cCAACGG----UCgACGCGCGCGUgGAgUa -5'
14661 5' -59 NC_003525.1 + 20171 1.07 0.000543
Target:  5'- cGGUUGCCAGCUGCGCGCGCACCUCAUc -3'
miRNA:   3'- -CCAACGGUCGACGCGCGCGUGGAGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.