Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14667 | 3' | -50.5 | NC_003525.1 | + | 7887 | 0.8 | 0.294756 |
Target: 5'- gCCACCGGCAGCAUcuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA--AUGGCcgUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 46245 | 0.83 | 0.182406 |
Target: 5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3' miRNA: 3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 26812 | 1.13 | 0.001987 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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