miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14667 5' -58.8 NC_003525.1 + 37414 0.66 0.552595
Target:  5'- uUCAgCCaGCCGCUGUGCUUUCAGUGGa -3'
miRNA:   3'- cAGUgGG-CGGCGGUGUGGAAGUCGUC- -5'
14667 5' -58.8 NC_003525.1 + 8653 0.66 0.552595
Target:  5'- cUCuCCUGCgccaGCCugGCCUuuUCAGCAu -3'
miRNA:   3'- cAGuGGGCGg---CGGugUGGA--AGUCGUc -5'
14667 5' -58.8 NC_003525.1 + 9772 0.67 0.450399
Target:  5'- gGUCGCCCccaccggGCCuGCCGCACCUguuucuccuuUCGGUc- -3'
miRNA:   3'- -CAGUGGG-------CGG-CGGUGUGGA----------AGUCGuc -5'
14667 5' -58.8 NC_003525.1 + 21243 0.68 0.422983
Target:  5'- cUUGCCCGUgGCaaCGCGCCgaCGGCAGa -3'
miRNA:   3'- cAGUGGGCGgCG--GUGUGGaaGUCGUC- -5'
14667 5' -58.8 NC_003525.1 + 21180 0.68 0.395701
Target:  5'- ---uUCCGuuGCCACAUCUUCAgagaacGCAGg -3'
miRNA:   3'- caguGGGCggCGGUGUGGAAGU------CGUC- -5'
14667 5' -58.8 NC_003525.1 + 20654 0.69 0.361141
Target:  5'- cGUCACCCucuGuuGCCAUAuCCgcaUCAGCAu -3'
miRNA:   3'- -CAGUGGG---CggCGGUGU-GGa--AGUCGUc -5'
14667 5' -58.8 NC_003525.1 + 19817 0.7 0.336634
Target:  5'- aUCACCCaCCuuucuaGCCACACCgcCAGCAa -3'
miRNA:   3'- cAGUGGGcGG------CGGUGUGGaaGUCGUc -5'
14667 5' -58.8 NC_003525.1 + 60898 0.7 0.328739
Target:  5'- uUCACCCGggcCCG-CGCACUUUCAGUAa -3'
miRNA:   3'- cAGUGGGC---GGCgGUGUGGAAGUCGUc -5'
14667 5' -58.8 NC_003525.1 + 248 0.72 0.226656
Target:  5'- aUCACCa--C-CCACGCCUUCAGCAGu -3'
miRNA:   3'- cAGUGGgcgGcGGUGUGGAAGUCGUC- -5'
14667 5' -58.8 NC_003525.1 + 35796 0.74 0.184051
Target:  5'- -aCACCaaagCGCCGCCAUACCgguauugCAGCGGc -3'
miRNA:   3'- caGUGG----GCGGCGGUGUGGaa-----GUCGUC- -5'
14667 5' -58.8 NC_003525.1 + 26774 1.07 0.000621
Target:  5'- gGUCACCCGCCGCCACACCUUCAGCAGu -3'
miRNA:   3'- -CAGUGGGCGGCGGUGUGGAAGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.