miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1467 3' -59.1 NC_001335.1 + 36727 0.66 0.473868
Target:  5'- -gCCCUCguggacaccaACCGGGcCgucguagaCCUGGCGCAg -3'
miRNA:   3'- gaGGGAGa---------UGGUCCuGa-------GGACCGCGU- -5'
1467 3' -59.1 NC_001335.1 + 30996 0.66 0.463957
Target:  5'- aUCCUUCUGcuucauaccgcCCAGGuACgCCUGGCGgAu -3'
miRNA:   3'- gAGGGAGAU-----------GGUCC-UGaGGACCGCgU- -5'
1467 3' -59.1 NC_001335.1 + 27935 0.66 0.463957
Target:  5'- -gUCCUCagcgugUACCAGGgcaACUCCUGGC-CGu -3'
miRNA:   3'- gaGGGAG------AUGGUCC---UGAGGACCGcGU- -5'
1467 3' -59.1 NC_001335.1 + 41410 0.67 0.444466
Target:  5'- uUCCCggUGCCGGGGCc---GGCGCAg -3'
miRNA:   3'- gAGGGagAUGGUCCUGaggaCCGCGU- -5'
1467 3' -59.1 NC_001335.1 + 4376 0.67 0.416115
Target:  5'- uCUCCaaagCcGCCGGuuccagguucGACUCCUGGCGUg -3'
miRNA:   3'- -GAGGga--GaUGGUC----------CUGAGGACCGCGu -5'
1467 3' -59.1 NC_001335.1 + 42764 0.68 0.371415
Target:  5'- --aCUUCUGCgAGGcguacaGCUCCUGGUGCc -3'
miRNA:   3'- gagGGAGAUGgUCC------UGAGGACCGCGu -5'
1467 3' -59.1 NC_001335.1 + 22508 0.68 0.371415
Target:  5'- gCUCCCcagaaCUuguuCCAGGugUCCUGGaUGCc -3'
miRNA:   3'- -GAGGGa----GAu---GGUCCugAGGACC-GCGu -5'
1467 3' -59.1 NC_001335.1 + 46338 0.68 0.346212
Target:  5'- uUCUUggUGCgAGGAUgcgCCUGGCGCAg -3'
miRNA:   3'- gAGGGagAUGgUCCUGa--GGACCGCGU- -5'
1467 3' -59.1 NC_001335.1 + 451 0.68 0.346212
Target:  5'- -cCCCUCUA-UAGGGCcgcgCaCUGGCGCGg -3'
miRNA:   3'- gaGGGAGAUgGUCCUGa---G-GACCGCGU- -5'
1467 3' -59.1 NC_001335.1 + 33302 0.72 0.204485
Target:  5'- -aCCCUCcACCA--GCUCCUGGCGUu -3'
miRNA:   3'- gaGGGAGaUGGUccUGAGGACCGCGu -5'
1467 3' -59.1 NC_001335.1 + 38298 0.73 0.183975
Target:  5'- aCUCCCuggacaugagaUgUACCGGGGCUgCCUGGCGa- -3'
miRNA:   3'- -GAGGG-----------AgAUGGUCCUGA-GGACCGCgu -5'
1467 3' -59.1 NC_001335.1 + 14169 1.08 0.000441
Target:  5'- gCUCCCUCUACCAGGACUCCUGGCGCAu -3'
miRNA:   3'- -GAGGGAGAUGGUCCUGAGGACCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.