miRNA: 3'- caUGCGuGCGGu---UCGUACUGUUgcGG- -5'
miRNA: 3'- caUGCGU----GCGGUU-----------CGUACUGUUGCGg -5'
miRNA: 3'- caUGCGUGCGGU-----------UCGuaCUGUugCGg -5'
miRNA: 3'- -CAUGCGUGCGGUUCGUACUGUUGCGG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14672 | 5' | -52.3 | NC_003525.1 | + | 26337 | 0.71 | 0.617076 |
|
Target: 5'- -gACGC-CGCCugcuGGCGUGACAAa-CCg -3' miRNA: 3'- caUGCGuGCGGu---UCGUACUGUUgcGG- -5' |
|||||||
| 14672 | 5' | -52.3 | NC_003525.1 | + | 46714 | 0.71 | 0.605893 |
|
Target: 5'- -gACGCAaggcUGCCGAugaacugaccuGUAUGACAGCGCg -3' miRNA: 3'- caUGCGU----GCGGUU-----------CGUACUGUUGCGg -5' |
|||||||
| 14672 | 5' | -52.3 | NC_003525.1 | + | 21403 | 0.71 | 0.583607 |
|
Target: 5'- -cGCGUACGCCGgaugaaaaucaGGCcgGACGugGUg -3' miRNA: 3'- caUGCGUGCGGU-----------UCGuaCUGUugCGg -5' |
|||||||
| 14672 | 5' | -52.3 | NC_003525.1 | + | 48449 | 1.13 | 0.001183 |
|
Target: 5'- gGUACGCACGCCAAGCAUGACAACGCCa -3' miRNA: 3'- -CAUGCGUGCGGUUCGUACUGUUGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home