Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14677 | 5' | -56 | NC_003525.1 | + | 17609 | 0.69 | 0.513088 |
Target: 5'- aCGACgUGAaGaaAUUGAGGCUGCGAa -3' miRNA: 3'- cGCUG-ACUaCggUGACUCCGACGCUg -5' |
|||||||
14677 | 5' | -56 | NC_003525.1 | + | 13473 | 0.7 | 0.462092 |
Target: 5'- cGCGgugauugaaacACUGGUGUCGCgGaAGGUUGUGGCg -3' miRNA: 3'- -CGC-----------UGACUACGGUGaC-UCCGACGCUG- -5' |
|||||||
14677 | 5' | -56 | NC_003525.1 | + | 8120 | 0.72 | 0.327396 |
Target: 5'- cGC-ACUGGUGCCGCUGAGcGCauccgGUGAa -3' miRNA: 3'- -CGcUGACUACGGUGACUC-CGa----CGCUg -5' |
|||||||
14677 | 5' | -56 | NC_003525.1 | + | 8437 | 1.11 | 0.000675 |
Target: 5'- aGCGACUGAUGCCACUGAGGCUGCGACc -3' miRNA: 3'- -CGCUGACUACGGUGACUCCGACGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home