Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 19662 | 0.67 | 0.443592 |
|
Target: 5'- aUGaUUCUGC-GGUCUGGGuGGCGAAg -3' miRNA: 3'- gACcAGGACGuCCAGGCUCuCCGCUU- -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 5082 | 0.67 | 0.440737 |
|
Target: 5'- aCUGGUCCUGCAGGUcauuaaaguacgucCCcAGAaGCGu- -3' miRNA: 3'- -GACCAGGACGUCCA--------------GGcUCUcCGCuu -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 11833 | 0.68 | 0.394752 |
|
Target: 5'- uCUGGUUCcaaaaucccuucaaUGCAGGcgugUCUGAGcAGGCGGAg -3' miRNA: 3'- -GACCAGG--------------ACGUCC----AGGCUC-UCCGCUU- -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 8953 | 0.68 | 0.388565 |
|
Target: 5'- -aGGUCCUGCAGGcCCGcaAGGUc-- -3' miRNA: 3'- gaCCAGGACGUCCaGGCucUCCGcuu -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 9684 | 0.68 | 0.388565 |
|
Target: 5'- -aGGUgCgGCAGGcCCGguGGGGGCGAc -3' miRNA: 3'- gaCCAgGaCGUCCaGGC--UCUCCGCUu -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 8806 | 0.68 | 0.362784 |
|
Target: 5'- -aGGgCCUGCuGGUCCGcGuGGUGAGa -3' miRNA: 3'- gaCCaGGACGuCCAGGCuCuCCGCUU- -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 9538 | 0.77 | 0.086335 |
|
Target: 5'- gCUGGUCCgGCAGGcCCGcAGGGGcCGAAa -3' miRNA: 3'- -GACCAGGaCGUCCaGGC-UCUCC-GCUU- -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 9058 | 1.05 | 0.000705 |
|
Target: 5'- cCUGGUCCUGCAGGUCCGAGAGGCGAAc -3' miRNA: 3'- -GACCAGGACGUCCAGGCUCUCCGCUU- -5' |
|||||||
| 14679 | 3' | -59.5 | NC_003525.1 | + | 9157 | 1.05 | 0.000705 |
|
Target: 5'- cCUGGUCCUGCAGGUCCGAGAGGCGAAc -3' miRNA: 3'- -GACCAGGACGUCCAGGCUCUCCGCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home