miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1468 3' -52.3 NC_001335.1 + 40463 0.66 0.899899
Target:  5'- uGAUCCCGUC--CUugGUCuugcaGGUCa -3'
miRNA:   3'- cCUAGGGUAGcuGAugCAGug---CCAGg -5'
1468 3' -52.3 NC_001335.1 + 37622 0.66 0.892854
Target:  5'- -----aCAUCGACUGCGUCGaaGUCg -3'
miRNA:   3'- ccuaggGUAGCUGAUGCAGUgcCAGg -5'
1468 3' -52.3 NC_001335.1 + 36734 0.66 0.885544
Target:  5'- cGGcgCUgGUCGAgUACGUCAgcuCGuUCCa -3'
miRNA:   3'- -CCuaGGgUAGCUgAUGCAGU---GCcAGG- -5'
1468 3' -52.3 NC_001335.1 + 35687 0.66 0.885544
Target:  5'- aGAUCCCGUCGG---UGUaGCGGcUCCu -3'
miRNA:   3'- cCUAGGGUAGCUgauGCAgUGCC-AGG- -5'
1468 3' -52.3 NC_001335.1 + 42101 0.66 0.870148
Target:  5'- gGGAcUCggUCGUCGGCaaggACGaCACGGUCUg -3'
miRNA:   3'- -CCU-AG--GGUAGCUGa---UGCaGUGCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 20144 0.67 0.853759
Target:  5'- aGAUCU--UCGAacggaUGCGggUCGCGGUCCu -3'
miRNA:   3'- cCUAGGguAGCUg----AUGC--AGUGCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 29357 0.67 0.845211
Target:  5'- gGGAUgCCGgugaUCGACaUGCG-CGaGGUCCg -3'
miRNA:   3'- -CCUAgGGU----AGCUG-AUGCaGUgCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 46378 0.67 0.843474
Target:  5'- cGGA-CCCGguacgaccucagCGGCUAUGccCACGGUCa -3'
miRNA:   3'- -CCUaGGGUa-----------GCUGAUGCa-GUGCCAGg -5'
1468 3' -52.3 NC_001335.1 + 8136 0.67 0.832867
Target:  5'- aGGuUCgCGuUCGACUGCGagcgacucgaggaCGCGGUCCu -3'
miRNA:   3'- -CCuAGgGU-AGCUGAUGCa------------GUGCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 916 0.67 0.832867
Target:  5'- gGGAUCCCGUCGAaacagaaaucgaACGUguCGGgagucgCCc -3'
miRNA:   3'- -CCUAGGGUAGCUga----------UGCAguGCCa-----GG- -5'
1468 3' -52.3 NC_001335.1 + 47794 0.67 0.827448
Target:  5'- uGAUgCCCGUCccACaGCGUCuuuCGGUCCc -3'
miRNA:   3'- cCUA-GGGUAGc-UGaUGCAGu--GCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 9312 0.68 0.818253
Target:  5'- aGGAUCCgggccagguacgCAUCGAacaGCGUCuggcCGGUCUc -3'
miRNA:   3'- -CCUAGG------------GUAGCUga-UGCAGu---GCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 44969 0.68 0.818253
Target:  5'- --cUCCCAcugggcgugggaUCGACUgGCGUuaCGCGGUCg -3'
miRNA:   3'- ccuAGGGU------------AGCUGA-UGCA--GUGCCAGg -5'
1468 3' -52.3 NC_001335.1 + 3923 0.68 0.77961
Target:  5'- gGGAUCCgGugaacUCGAUgucaUACGUC-CGGuUCCa -3'
miRNA:   3'- -CCUAGGgU-----AGCUG----AUGCAGuGCC-AGG- -5'
1468 3' -52.3 NC_001335.1 + 37698 0.69 0.769537
Target:  5'- gGGAUCgaCuUCGACgcagucgAUGUCACGG-CCa -3'
miRNA:   3'- -CCUAGg-GuAGCUGa------UGCAGUGCCaGG- -5'
1468 3' -52.3 NC_001335.1 + 20900 0.7 0.673864
Target:  5'- aGAUCgCGUCGGC-ACGU--CGGUCCu -3'
miRNA:   3'- cCUAGgGUAGCUGaUGCAguGCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 43947 0.71 0.651878
Target:  5'- aGGAUCCgAUUGAC-AUGUCGgaGGUCg -3'
miRNA:   3'- -CCUAGGgUAGCUGaUGCAGUg-CCAGg -5'
1468 3' -52.3 NC_001335.1 + 30252 0.71 0.640852
Target:  5'- cGGAUCgCCAUCGGCgcucucaaGCG-CAUGGUgCu -3'
miRNA:   3'- -CCUAG-GGUAGCUGa-------UGCaGUGCCAgG- -5'
1468 3' -52.3 NC_001335.1 + 47156 0.71 0.627612
Target:  5'- cGGAUCUgGUCGACguggaugcagcCGaCGCGGUCUg -3'
miRNA:   3'- -CCUAGGgUAGCUGau---------GCaGUGCCAGG- -5'
1468 3' -52.3 NC_001335.1 + 11622 0.71 0.618787
Target:  5'- cGAUCCaCGaCGcACUcACGUCGcCGGUCCa -3'
miRNA:   3'- cCUAGG-GUaGC-UGA-UGCAGU-GCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.