miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14682 5' -55.9 NC_003525.1 + 3145 0.66 0.736417
Target:  5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3'
miRNA:   3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5'
14682 5' -55.9 NC_003525.1 + 9447 0.66 0.724921
Target:  5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3'
miRNA:   3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5'
14682 5' -55.9 NC_003525.1 + 38054 0.66 0.719659
Target:  5'- -aAGGCUCUGGCcUgGGGAaaacaguacgagaacGACGCCa -3'
miRNA:   3'- ugUUCGAGGCCGuGgCCUU---------------UUGCGGc -5'
14682 5' -55.9 NC_003525.1 + 20598 0.66 0.715433
Target:  5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3'
miRNA:   3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5'
14682 5' -55.9 NC_003525.1 + 17008 0.66 0.693055
Target:  5'- gGCGGuGCUaaaacacCUGGCACCGGcgcuAAUGCCa -3'
miRNA:   3'- -UGUU-CGA-------GGCCGUGGCCuu--UUGCGGc -5'
14682 5' -55.9 NC_003525.1 + 46925 0.66 0.683381
Target:  5'- cGCAuaauAGCuUCUGuGCGCCGGAcguUGCCGc -3'
miRNA:   3'- -UGU----UCG-AGGC-CGUGGCCUuuuGCGGC- -5'
14682 5' -55.9 NC_003525.1 + 5596 0.67 0.618262
Target:  5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3'
miRNA:   3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5'
14682 5' -55.9 NC_003525.1 + 56701 0.67 0.617174
Target:  5'- uGCAGGCUguuauucCCGGCAaagCGGAAAGCcagcguauGCCa -3'
miRNA:   3'- -UGUUCGA-------GGCCGUg--GCCUUUUG--------CGGc -5'
14682 5' -55.9 NC_003525.1 + 21373 0.68 0.607394
Target:  5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3'
miRNA:   3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5'
14682 5' -55.9 NC_003525.1 + 2127 0.68 0.574951
Target:  5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3'
miRNA:   3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5'
14682 5' -55.9 NC_003525.1 + 11509 0.68 0.564217
Target:  5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3'
miRNA:   3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5'
14682 5' -55.9 NC_003525.1 + 11420 0.7 0.480854
Target:  5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3'
miRNA:   3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5'
14682 5' -55.9 NC_003525.1 + 9690 0.71 0.430936
Target:  5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3'
miRNA:   3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5'
14682 5' -55.9 NC_003525.1 + 56202 0.71 0.422445
Target:  5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3'
miRNA:   3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5'
14682 5' -55.9 NC_003525.1 + 61510 0.73 0.304276
Target:  5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3'
miRNA:   3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5'
14682 5' -55.9 NC_003525.1 + 8570 0.76 0.213196
Target:  5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3'
miRNA:   3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5'
14682 5' -55.9 NC_003525.1 + 21487 1.08 0.001238
Target:  5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3'
miRNA:   3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.