miRNA: 3'- gCCUUGCAUUGCG-CGUaUAGcGCUuu -5'
miRNA: 3'- gCCUUGCauuGCGCGuau-AGCGCuuU- -5'
miRNA: 3'- -GCCUUGcauUGCGcGUAUAGCGCUuu -5'
miRNA: 3'- -GCCUugCAUUGCGc--GU-AUAGCGCUUu -5'
miRNA: 3'- -GCCUUGCAUUGCGCGUAUAGCGCUUU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14684 | 5' | -49.4 | NC_003525.1 | + | 45309 | 0.66 | 0.962123 |
|
Target: 5'- aGGAGCGUAAUGUgGCAgAUCuCGAu- -3' miRNA: 3'- gCCUUGCAUUGCG-CGUaUAGcGCUuu -5' |
|||||||
| 14684 | 5' | -49.4 | NC_003525.1 | + | 3462 | 0.69 | 0.880031 |
|
Target: 5'- gGGAGCGg--UGCGCuuauUCGCGggGg -3' miRNA: 3'- gCCUUGCauuGCGCGuau-AGCGCuuU- -5' |
|||||||
| 14684 | 5' | -49.4 | NC_003525.1 | + | 46084 | 0.7 | 0.837314 |
|
Target: 5'- gCGGAACagcACGCaCAUGUCGCGGu- -3' miRNA: 3'- -GCCUUGcauUGCGcGUAUAGCGCUuu -5' |
|||||||
| 14684 | 5' | -49.4 | NC_003525.1 | + | 23943 | 0.72 | 0.725023 |
|
Target: 5'- aCGGAugGUGACGUuauCAcUGUCGCGGGu -3' miRNA: 3'- -GCCUugCAUUGCGc--GU-AUAGCGCUUu -5' |
|||||||
| 14684 | 5' | -49.4 | NC_003525.1 | + | 25052 | 1.07 | 0.005837 |
|
Target: 5'- cCGGAACGUAACGCGCAUAUCGCGAAAa -3' miRNA: 3'- -GCCUUGCAUUGCGCGUAUAGCGCUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home