miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14685 3' -42.6 NC_003525.1 + 58970 0.67 0.999845
Target:  5'- -aCUCAUUCGacGggGAUUAACGaCAAAa -3'
miRNA:   3'- cgGAGUAGGU--CuuUUAAUUGC-GUUUa -5'
14685 3' -42.6 NC_003525.1 + 20724 0.67 0.999793
Target:  5'- -aCUCAgCCAGAAAGaggGGCGCAc-- -3'
miRNA:   3'- cgGAGUaGGUCUUUUaa-UUGCGUuua -5'
14685 3' -42.6 NC_003525.1 + 2386 0.67 0.999793
Target:  5'- aCCUCAUCCugugccGGAA--UGGCGCGGGa -3'
miRNA:   3'- cGGAGUAGGu-----CUUUuaAUUGCGUUUa -5'
14685 3' -42.6 NC_003525.1 + 3069 0.69 0.998809
Target:  5'- gGCa-CAUCCAGAAGAUUAACccaCAGGUc -3'
miRNA:   3'- -CGgaGUAGGUCUUUUAAUUGc--GUUUA- -5'
14685 3' -42.6 NC_003525.1 + 7825 0.69 0.998518
Target:  5'- aGCCUCuUCCAGuGGAAcUGGCGUAu-- -3'
miRNA:   3'- -CGGAGuAGGUC-UUUUaAUUGCGUuua -5'
14685 3' -42.6 NC_003525.1 + 46621 0.69 0.998169
Target:  5'- aGUCUUAUCCGuGGAAAUcgAACGCGc-- -3'
miRNA:   3'- -CGGAGUAGGU-CUUUUAa-UUGCGUuua -5'
14685 3' -42.6 NC_003525.1 + 57898 0.69 0.998169
Target:  5'- uUUUCAUCCAGAAacuggucgagGAUUucaGGCGCAGAa -3'
miRNA:   3'- cGGAGUAGGUCUU----------UUAA---UUGCGUUUa -5'
14685 3' -42.6 NC_003525.1 + 23353 0.69 0.998169
Target:  5'- cGCCUUAUCCuGAAca-UAACGCu--- -3'
miRNA:   3'- -CGGAGUAGGuCUUuuaAUUGCGuuua -5'
14685 3' -42.6 NC_003525.1 + 161 0.7 0.996006
Target:  5'- cGCCUUAgCCGGAuauUUcGCGCAAAUu -3'
miRNA:   3'- -CGGAGUaGGUCUuuuAAuUGCGUUUA- -5'
14685 3' -42.6 NC_003525.1 + 25092 0.72 0.987146
Target:  5'- -aCUCAUCCAGAucggccuGCGCAAu- -3'
miRNA:   3'- cgGAGUAGGUCUuuuaau-UGCGUUua -5'
14685 3' -42.6 NC_003525.1 + 49651 0.74 0.965448
Target:  5'- gGCUcCGUCCAGGAAGguuaUGACGCAu-- -3'
miRNA:   3'- -CGGaGUAGGUCUUUUa---AUUGCGUuua -5'
14685 3' -42.6 NC_003525.1 + 31431 1.09 0.022713
Target:  5'- uGCCUCAUCCAGAAAAUUAACGCAAAUu -3'
miRNA:   3'- -CGGAGUAGGUCUUUUAAUUGCGUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.