Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14686 | 3' | -49.4 | NC_003525.1 | + | 35795 | 1.14 | 0.002061 |
Target: 5'- aGCCGAUACAUGCCACACGCAUUACUCa -3' miRNA: 3'- -CGGCUAUGUACGGUGUGCGUAAUGAG- -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 20079 | 0.66 | 0.954981 |
Target: 5'- uGCCGAUGagGUG-CGCGCGCA--GCUg -3' miRNA: 3'- -CGGCUAUg-UACgGUGUGCGUaaUGAg -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 12829 | 0.66 | 0.954981 |
Target: 5'- uGCUGAUGCAgugcugguUGCCACgACGCcgggGCa- -3' miRNA: 3'- -CGGCUAUGU--------ACGGUG-UGCGuaa-UGag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 6381 | 0.66 | 0.954981 |
Target: 5'- aGCCGGUGCAUGUUGacaGCGCGa----- -3' miRNA: 3'- -CGGCUAUGUACGGUg--UGCGUaaugag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 56424 | 0.68 | 0.923651 |
Target: 5'- gGCCGGUAUcuucacUGCCACAgGgCGUUGCc- -3' miRNA: 3'- -CGGCUAUGu-----ACGGUGUgC-GUAAUGag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 14226 | 0.68 | 0.910826 |
Target: 5'- gGCCGAUGuCAUG-UACACGCAUg---- -3' miRNA: 3'- -CGGCUAU-GUACgGUGUGCGUAaugag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 56126 | 0.76 | 0.523186 |
Target: 5'- uCCGGUGCAgaaGCCACAgGCGUcacaacacUGCUCu -3' miRNA: 3'- cGGCUAUGUa--CGGUGUgCGUA--------AUGAG- -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 1598 | 0.77 | 0.469471 |
Target: 5'- uGCCGAUGCAUGCCGccUugGCAaUAUg- -3' miRNA: 3'- -CGGCUAUGUACGGU--GugCGUaAUGag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 35918 | 0.72 | 0.71556 |
Target: 5'- aGCCGA-GCGcGCCGCugGCAUUcGCaUCa -3' miRNA: 3'- -CGGCUaUGUaCGGUGugCGUAA-UG-AG- -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 43196 | 0.71 | 0.78028 |
Target: 5'- uGuuGAauuaGC-UGCCAUACGCGUUACUg -3' miRNA: 3'- -CggCUa---UGuACGGUGUGCGUAAUGAg -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 46535 | 0.69 | 0.881659 |
Target: 5'- uGCCGA--CggGCUACGCGCAUUcCUg -3' miRNA: 3'- -CGGCUauGuaCGGUGUGCGUAAuGAg -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 51631 | 0.68 | 0.903969 |
Target: 5'- uGCUGGU---UGCaCAcCACGCAUUGCUUg -3' miRNA: 3'- -CGGCUAuguACG-GU-GUGCGUAAUGAG- -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 39124 | 0.67 | 0.929614 |
Target: 5'- uCCGGUACAUGgUugAaacCAUUGCUCa -3' miRNA: 3'- cGGCUAUGUACgGugUgc-GUAAUGAG- -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 21330 | 0.66 | 0.966766 |
Target: 5'- uGCCGucgGCGcguUGCCACGgGCAagGCg- -3' miRNA: 3'- -CGGCua-UGU---ACGGUGUgCGUaaUGag -5' |
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14686 | 3' | -49.4 | NC_003525.1 | + | 47675 | 0.72 | 0.704387 |
Target: 5'- cGCUGcuauugGCAUGCCuuGCACGCGUUuacCUCa -3' miRNA: 3'- -CGGCua----UGUACGG--UGUGCGUAAu--GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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