Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 36104 | 0.66 | 0.72748 |
|
Target: 5'- aGCAGggccACCCGgaaGGCGCUGAucGGUUg -3' miRNA: 3'- gUGUC----UGGGCgg-CUGUGACUuuCCAA- -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 11230 | 0.66 | 0.72748 |
|
Target: 5'- gGCGGuaAgCCGCCGAuccCGCUGAAcGGUg -3' miRNA: 3'- gUGUC--UgGGCGGCU---GUGACUUuCCAa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 25888 | 0.66 | 0.72748 |
|
Target: 5'- gACAGggcgaacgccaGCCCGCCGACGgc-GAGGGUUc -3' miRNA: 3'- gUGUC-----------UGGGCGGCUGUgacUUUCCAA- -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 13862 | 0.66 | 0.72748 |
|
Target: 5'- gACGGugCCGCCGAUggcgGCUcGGguGAGGa- -3' miRNA: 3'- gUGUCugGGCGGCUG----UGA-CU--UUCCaa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 31437 | 0.67 | 0.627618 |
|
Target: 5'- aACAGuuCCGCCGagagagggGCGCUGAauGAGGa- -3' miRNA: 3'- gUGUCugGGCGGC--------UGUGACU--UUCCaa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 18825 | 0.68 | 0.571751 |
|
Target: 5'- --uGGACgCCGCCGugGCcgUGGGAGGa- -3' miRNA: 3'- gugUCUG-GGCGGCugUG--ACUUUCCaa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 9137 | 0.71 | 0.434669 |
|
Target: 5'- uGCAGGCgaCCGCCGA-GCUGAuGGGUg -3' miRNA: 3'- gUGUCUG--GGCGGCUgUGACUuUCCAa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 42241 | 0.71 | 0.387151 |
|
Target: 5'- gUACGG-CCCGCCGuu-CUGAAAGGa- -3' miRNA: 3'- -GUGUCuGGGCGGCuguGACUUUCCaa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 32794 | 0.76 | 0.198657 |
|
Target: 5'- uGCGGACCCgGCCGACguGCUGGccAAGGUc -3' miRNA: 3'- gUGUCUGGG-CGGCUG--UGACU--UUCCAa -5' |
|||||||
| 1469 | 3' | -54.6 | NC_001335.1 | + | 14942 | 1.04 | 0.002076 |
|
Target: 5'- uCACAGACCCGCCGACACUGAAAGGUUc -3' miRNA: 3'- -GUGUCUGGGCGGCUGUGACUUUCCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home