Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1469 | 5' | -45.1 | NC_001335.1 | + | 1349 | 0.66 | 0.998186 |
Target: 5'- --------aUCGCCAUCGACGCc--- -3' miRNA: 3'- guuugcauaAGUGGUAGCUGCGuaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 12674 | 0.7 | 0.970599 |
Target: 5'- uGGACGUGaaagccgCugCGUCGGCGaCGUUCc -3' miRNA: 3'- gUUUGCAUaa-----GugGUAGCUGC-GUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 32964 | 0.69 | 0.984167 |
Target: 5'- uUAAugGggcaugCGCCGUUGGCGCAcUCu -3' miRNA: 3'- -GUUugCauaa--GUGGUAGCUGCGUaAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 32849 | 0.68 | 0.986184 |
Target: 5'- gAGGcCGUcgUCACCGUCGccgacgGCGCggUCu -3' miRNA: 3'- gUUU-GCAuaAGUGGUAGC------UGCGuaAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 50660 | 0.68 | 0.987998 |
Target: 5'- -cGACGUAgaucUUGCCGUCGAUGUAa-- -3' miRNA: 3'- guUUGCAUa---AGUGGUAGCUGCGUaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 16165 | 0.67 | 0.993483 |
Target: 5'- aUAGGCGUAggCAUCGUCGcCGUAg-- -3' miRNA: 3'- -GUUUGCAUaaGUGGUAGCuGCGUaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 40393 | 0.67 | 0.994477 |
Target: 5'- gAGACGUuugCGCCAUCGACcuGCu--- -3' miRNA: 3'- gUUUGCAuaaGUGGUAGCUG--CGuaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 20282 | 0.66 | 0.996748 |
Target: 5'- -cGAUGUGUUCACCGggGACuacaCGUUCc -3' miRNA: 3'- guUUGCAUAAGUGGUagCUGc---GUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 25800 | 0.66 | 0.996748 |
Target: 5'- gGAACcc--UCGCCGUCGGCgggcugGCGUUCg -3' miRNA: 3'- gUUUGcauaAGUGGUAGCUG------CGUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 37901 | 0.74 | 0.869347 |
Target: 5'- -cGGCGUcgUCGCCGUCGGCcaggaGUUCa -3' miRNA: 3'- guUUGCAuaAGUGGUAGCUGcg---UAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 14975 | 1.11 | 0.008854 |
Target: 5'- aCAAACGUAUUCACCAUCGACGCAUUCc -3' miRNA: 3'- -GUUUGCAUAAGUGGUAGCUGCGUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 30260 | 0.79 | 0.584346 |
Target: 5'- aGGACGUGcggaUCGCCAUCGGCGCucUCa -3' miRNA: 3'- gUUUGCAUa---AGUGGUAGCUGCGuaAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 14057 | 0.66 | 0.998186 |
Target: 5'- -cAGCGUGUgCAgCGUCGGUGCGUUg -3' miRNA: 3'- guUUGCAUAaGUgGUAGCUGCGUAAg -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 47401 | 0.66 | 0.997782 |
Target: 5'- gAAGCaccUGaUCACCGUCGucguUGCAUUCg -3' miRNA: 3'- gUUUGc--AUaAGUGGUAGCu---GCGUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 44495 | 0.66 | 0.997782 |
Target: 5'- aCGAAgGUAUg-GCCggCGGCGgGUUCa -3' miRNA: 3'- -GUUUgCAUAagUGGuaGCUGCgUAAG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 46168 | 0.68 | 0.989622 |
Target: 5'- -cGGCGgaaaagUCGCCGaCGACGCAUg- -3' miRNA: 3'- guUUGCaua---AGUGGUaGCUGCGUAag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 7320 | 0.68 | 0.987998 |
Target: 5'- aCGAACGUcgggcgGUUacccuCCAUCGACGCGg-- -3' miRNA: 3'- -GUUUGCA------UAAgu---GGUAGCUGCGUaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 6401 | 0.73 | 0.877801 |
Target: 5'- gAGGCGUAcaugCGCCGUCGuGCGCGUagUCg -3' miRNA: 3'- gUUUGCAUaa--GUGGUAGC-UGCGUA--AG- -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 19501 | 0.74 | 0.860606 |
Target: 5'- gCAGGCGgaagUCGCCAUCG-CGCAg-- -3' miRNA: 3'- -GUUUGCaua-AGUGGUAGCuGCGUaag -5' |
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1469 | 5' | -45.1 | NC_001335.1 | + | 32123 | 0.74 | 0.860606 |
Target: 5'- aGAGCGUGUUCgagcacGCC-UCGGCGaCGUUCu -3' miRNA: 3'- gUUUGCAUAAG------UGGuAGCUGC-GUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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