miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14695 5' -48.7 NC_003529.1 + 68921 0.66 0.998683
Target:  5'- -----gUGGCGUACGgccgGcaACGCgAUGCg -3'
miRNA:   3'- auguuaACCGCAUGCa---C--UGUGgUACG- -5'
14695 5' -48.7 NC_003529.1 + 21693 0.66 0.998076
Target:  5'- gGCGAUcuUGGCG-AUGUGGCAUacgucuUGCu -3'
miRNA:   3'- aUGUUA--ACCGCaUGCACUGUGgu----ACG- -5'
14695 5' -48.7 NC_003529.1 + 42797 0.67 0.996735
Target:  5'- cACGGUcUGGUGgacACGcUGGCugUAUGCg -3'
miRNA:   3'- aUGUUA-ACCGCa--UGC-ACUGugGUACG- -5'
14695 5' -48.7 NC_003529.1 + 46384 0.67 0.996391
Target:  5'- aAUAGUUGGCGUACGUcuugagaaugucgcGCACUuggucccgAUGCg -3'
miRNA:   3'- aUGUUAACCGCAUGCAc-------------UGUGG--------UACG- -5'
14695 5' -48.7 NC_003529.1 + 41224 0.67 0.996145
Target:  5'- -----aUGGUGUGUGUGcaGCGCCGUGUa -3'
miRNA:   3'- auguuaACCGCAUGCAC--UGUGGUACG- -5'
14695 5' -48.7 NC_003529.1 + 152544 0.68 0.994703
Target:  5'- aGCAAUugUGGC-UACcaGAgCACCAUGCa -3'
miRNA:   3'- aUGUUA--ACCGcAUGcaCU-GUGGUACG- -5'
14695 5' -48.7 NC_003529.1 + 102850 0.68 0.992852
Target:  5'- -uCGAUa-GUGUACGUGGCAUCAaUGCg -3'
miRNA:   3'- auGUUAacCGCAUGCACUGUGGU-ACG- -5'
14695 5' -48.7 NC_003529.1 + 37875 0.68 0.99175
Target:  5'- cACGGuUUGcGCGUGCGcgaaaUGGC-CCGUGCu -3'
miRNA:   3'- aUGUU-AAC-CGCAUGC-----ACUGuGGUACG- -5'
14695 5' -48.7 NC_003529.1 + 13946 0.7 0.98206
Target:  5'- -----aUGGCGUcguAgGUGACGCCuGUGCu -3'
miRNA:   3'- auguuaACCGCA---UgCACUGUGG-UACG- -5'
14695 5' -48.7 NC_003529.1 + 114885 0.7 0.97984
Target:  5'- cUGCAcGUUGGCGUAaaacGAUGCCGUGUu -3'
miRNA:   3'- -AUGU-UAACCGCAUgca-CUGUGGUACG- -5'
14695 5' -48.7 NC_003529.1 + 45297 0.71 0.968894
Target:  5'- cACAGac-GCGUuuccCGUGGCACCAUGUc -3'
miRNA:   3'- aUGUUaacCGCAu---GCACUGUGGUACG- -5'
14695 5' -48.7 NC_003529.1 + 141612 0.71 0.968894
Target:  5'- aACG--UGGUGUACGUGAa--CAUGCc -3'
miRNA:   3'- aUGUuaACCGCAUGCACUgugGUACG- -5'
14695 5' -48.7 NC_003529.1 + 98501 0.71 0.965599
Target:  5'- cGCGA-UGGCGUGCaccGACACUggGCg -3'
miRNA:   3'- aUGUUaACCGCAUGca-CUGUGGuaCG- -5'
14695 5' -48.7 NC_003529.1 + 137782 0.71 0.965599
Target:  5'- cACGuaaaUGGCGUauuuguAUGUGACGCCA-GCg -3'
miRNA:   3'- aUGUua--ACCGCA------UGCACUGUGGUaCG- -5'
14695 5' -48.7 NC_003529.1 + 133282 0.71 0.957897
Target:  5'- gGCAAUgguugcgUGcGCGuUACGUGAUAgCGUGCa -3'
miRNA:   3'- aUGUUA-------AC-CGC-AUGCACUGUgGUACG- -5'
14695 5' -48.7 NC_003529.1 + 66881 0.71 0.954261
Target:  5'- cACGAUuUGGUGUGCaugGUGACGCCugAUGUc -3'
miRNA:   3'- aUGUUA-ACCGCAUG---CACUGUGG--UACG- -5'
14695 5' -48.7 NC_003529.1 + 111553 0.78 0.699542
Target:  5'- aUACGGUUGGUGUACcguggGUGACAUgAUGUg -3'
miRNA:   3'- -AUGUUAACCGCAUG-----CACUGUGgUACG- -5'
14695 5' -48.7 NC_003529.1 + 17058 1.12 0.009028
Target:  5'- cUACAAUUGGCGUACGUGACACCAUGCa -3'
miRNA:   3'- -AUGUUAACCGCAUGCACUGUGGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.