miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14696 5' -55.1 NC_003529.1 + 105731 0.66 0.941205
Target:  5'- -----aUCGCGGaGUGCgauagCGGuCGCCCa -3'
miRNA:   3'- acuugaAGCGCCgUACGa----GCU-GCGGG- -5'
14696 5' -55.1 NC_003529.1 + 145445 0.66 0.926736
Target:  5'- aGGAUUguugcUCGCGGCuacauUGaaagcgggaacaucaUCGAUGCCCa -3'
miRNA:   3'- aCUUGA-----AGCGCCGu----ACg--------------AGCUGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 36601 0.67 0.914414
Target:  5'- cGAccGCUUCGaCGGCuucgucgGUGCUuugcaCGcCGCCCu -3'
miRNA:   3'- aCU--UGAAGC-GCCG-------UACGA-----GCuGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 107354 0.67 0.90904
Target:  5'- -------gGCGGCAaagUGCUUG-CGCCCa -3'
miRNA:   3'- acuugaagCGCCGU---ACGAGCuGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 5962 0.67 0.902845
Target:  5'- gGAGCUUCGauGCGggaccacgaaCUCGACGCUa -3'
miRNA:   3'- aCUUGAAGCgcCGUac--------GAGCUGCGGg -5'
14696 5' -55.1 NC_003529.1 + 66217 0.67 0.896415
Target:  5'- uUGAGCcUUG-GGCAUuuUUGACGCCUg -3'
miRNA:   3'- -ACUUGaAGCgCCGUAcgAGCUGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 94414 0.68 0.875754
Target:  5'- cGAACcugUCGCGcCAUGuUUCGgucGCGCCCc -3'
miRNA:   3'- aCUUGa--AGCGCcGUAC-GAGC---UGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 143405 0.68 0.85313
Target:  5'- aGAGCUgcgcCGCGGCAUGUcgguguacggUCGcgagcaguUGCCCu -3'
miRNA:   3'- aCUUGAa---GCGCCGUACG----------AGCu-------GCGGG- -5'
14696 5' -55.1 NC_003529.1 + 137809 0.68 0.85313
Target:  5'- ---gUUUCGCaGCAguccuUGCaCGACGCCCa -3'
miRNA:   3'- acuuGAAGCGcCGU-----ACGaGCUGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 93470 0.69 0.837033
Target:  5'- -cAAUUUCGUGGacgGCUCGuCGCUCg -3'
miRNA:   3'- acUUGAAGCGCCguaCGAGCuGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 143223 0.69 0.820189
Target:  5'- uUGAGCaUCGcCGGCAUGaucuacgUUGGCGCaCCu -3'
miRNA:   3'- -ACUUGaAGC-GCCGUACg------AGCUGCG-GG- -5'
14696 5' -55.1 NC_003529.1 + 22483 0.7 0.793657
Target:  5'- uUGAGCUUUG-GGCAUuuUUGACGCUUg -3'
miRNA:   3'- -ACUUGAAGCgCCGUAcgAGCUGCGGG- -5'
14696 5' -55.1 NC_003529.1 + 44061 0.7 0.756277
Target:  5'- uUGcAAUUgCGCGGCAcgcUGCUCGugGUgCa -3'
miRNA:   3'- -AC-UUGAaGCGCCGU---ACGAGCugCGgG- -5'
14696 5' -55.1 NC_003529.1 + 148079 0.76 0.466934
Target:  5'- cGAuaACUUCG-GGUGUGCUCGGCGCa- -3'
miRNA:   3'- aCU--UGAAGCgCCGUACGAGCUGCGgg -5'
14696 5' -55.1 NC_003529.1 + 20889 1.12 0.002384
Target:  5'- gUGAACUUCGCGGCAUGCUCGACGCCCu -3'
miRNA:   3'- -ACUUGAAGCGCCGUACGAGCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.