miRNA: 3'- gUAUAAGGcu--CCACAUCGG---CUCGuUC- -5'
miRNA: 3'- guAUAAGGcucCACAUCGGCUCG----UUC- -5'
miRNA: 3'- -GUAUAAG-GCUcCACAUcGGCUCGUUc -5'
miRNA: 3'- -GUAUAAGGCUCCACAUCGGCUCGUUC- -5'
Results 1 - 4 of 4 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14697 | 3' | -50.6 | NC_003529.1 | + | 138753 | 0.66 | 0.992948 |
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Target: 5'- aAUGUUCCacauGGUGUGGCUguuGGGCcAGg -3' miRNA: 3'- gUAUAAGGcu--CCACAUCGG---CUCGuUC- -5' |
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| 14697 | 3' | -50.6 | NC_003529.1 | + | 8402 | 0.67 | 0.982485 |
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Target: 5'- -uUAUUCCaacGUGUGGCCGAGUcgucGAGa -3' miRNA: 3'- guAUAAGGcucCACAUCGGCUCG----UUC- -5' |
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| 14697 | 3' | -50.6 | NC_003529.1 | + | 148175 | 0.69 | 0.966595 |
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Target: 5'- gCAUGUUCaCGAcGUGUGaCCGGGCAGa -3' miRNA: 3'- -GUAUAAG-GCUcCACAUcGGCUCGUUc -5' |
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| 14697 | 3' | -50.6 | NC_003529.1 | + | 25660 | 1.1 | 0.008153 |
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Target: 5'- cCAUAUUCCGAGGUGUAGCCGAGCAAGa -3' miRNA: 3'- -GUAUAAGGCUCCACAUCGGCUCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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