miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14698 3' -46.3 NC_003529.1 + 141166 0.66 0.999953
Target:  5'- uUGaCAUAGUUgAGGUg-AUGUGCGuCGCu -3'
miRNA:   3'- -AC-GUAUUAA-UCCGgaUACACGUuGCG- -5'
14698 3' -46.3 NC_003529.1 + 44134 0.66 0.999937
Target:  5'- gGCGUAAUagcgaGGGUCUucg-GCGAUGCa -3'
miRNA:   3'- aCGUAUUAa----UCCGGAuacaCGUUGCG- -5'
14698 3' -46.3 NC_003529.1 + 134679 0.66 0.999937
Target:  5'- uUGUAUAGUUGGGCCaacUGUGaauaguuuacaUGUaucuGAUGCg -3'
miRNA:   3'- -ACGUAUUAAUCCGG---AUAC-----------ACG----UUGCG- -5'
14698 3' -46.3 NC_003529.1 + 34210 0.66 0.99989
Target:  5'- aGCAUG--UGGuGCCUcauaauuUGUGCGcCGCg -3'
miRNA:   3'- aCGUAUuaAUC-CGGAu------ACACGUuGCG- -5'
14698 3' -46.3 NC_003529.1 + 68923 0.66 0.99989
Target:  5'- gGCGUAc---GGCCg----GCAACGCg -3'
miRNA:   3'- aCGUAUuaauCCGGauacaCGUUGCG- -5'
14698 3' -46.3 NC_003529.1 + 133525 0.66 0.99988
Target:  5'- cGCAUGucgugauccgucauAUUGGGCCUG-GUGacuugGGCGUa -3'
miRNA:   3'- aCGUAU--------------UAAUCCGGAUaCACg----UUGCG- -5'
14698 3' -46.3 NC_003529.1 + 45514 0.66 0.999855
Target:  5'- --------cAGGCCUGUGUGaucuaAGCGUa -3'
miRNA:   3'- acguauuaaUCCGGAUACACg----UUGCG- -5'
14698 3' -46.3 NC_003529.1 + 61521 0.67 0.999812
Target:  5'- gGCAguUAAUU--GCCgacaaGUGCAGCGCa -3'
miRNA:   3'- aCGU--AUUAAucCGGaua--CACGUUGCG- -5'
14698 3' -46.3 NC_003529.1 + 104908 0.67 0.999812
Target:  5'- gGCAaAAUUuaucAGGCCUAUGaugaaauaacauUGCAGCa- -3'
miRNA:   3'- aCGUaUUAA----UCCGGAUAC------------ACGUUGcg -5'
14698 3' -46.3 NC_003529.1 + 25268 0.67 0.999689
Target:  5'- cGcCAUAAUUGGGguggaaaCUAUcGUGCAACcGCu -3'
miRNA:   3'- aC-GUAUUAAUCCg------GAUA-CACGUUG-CG- -5'
14698 3' -46.3 NC_003529.1 + 96108 0.69 0.998242
Target:  5'- cUGCGaaugguguUGAUgAGGCCUAgcaUGUGCggUGUc -3'
miRNA:   3'- -ACGU--------AUUAaUCCGGAU---ACACGuuGCG- -5'
14698 3' -46.3 NC_003529.1 + 558 0.69 0.996957
Target:  5'- uUGUAacaacGGUUGGGUCUA-GUGgGACGCa -3'
miRNA:   3'- -ACGUa----UUAAUCCGGAUaCACgUUGCG- -5'
14698 3' -46.3 NC_003529.1 + 10538 0.7 0.996385
Target:  5'- cGCAaacUAGUUuGGCUcgUAUGUGCGACa- -3'
miRNA:   3'- aCGU---AUUAAuCCGG--AUACACGUUGcg -5'
14698 3' -46.3 NC_003529.1 + 75402 0.71 0.990829
Target:  5'- gGCGUGA-UGGGCaugccgggugcgCUGUGUGCAcuCGCu -3'
miRNA:   3'- aCGUAUUaAUCCG------------GAUACACGUu-GCG- -5'
14698 3' -46.3 NC_003529.1 + 41214 0.73 0.974921
Target:  5'- aGgAUGGgggauGGUgUGUGUGCAGCGCc -3'
miRNA:   3'- aCgUAUUaau--CCGgAUACACGUUGCG- -5'
14698 3' -46.3 NC_003529.1 + 30300 1.01 0.07248
Target:  5'- aUGCAUAAUauGGCCUAUGUGCAACGCu -3'
miRNA:   3'- -ACGUAUUAauCCGGAUACACGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.