miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14698 5' -52.4 NC_003529.1 + 32208 0.7 0.909166
Target:  5'- -aGCGUCGcGUACc-GCgAUUGCCGCa -3'
miRNA:   3'- caUGCAGCuCGUGcuCGgUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 78354 0.7 0.909166
Target:  5'- -gACGgUGAGUACGAGCCuUUGacCCGUa -3'
miRNA:   3'- caUGCaGCUCGUGCUCGGuAAU--GGCG- -5'
14698 5' -52.4 NC_003529.1 + 93285 0.7 0.902866
Target:  5'- -aGCaGUCGAGCgACGAGCCGUccacgaaauugaUGCC-Ca -3'
miRNA:   3'- caUG-CAGCUCG-UGCUCGGUA------------AUGGcG- -5'
14698 5' -52.4 NC_003529.1 + 143510 0.7 0.896323
Target:  5'- -aGCGUacaGAGauuugcCACGcGCCAUUGCCGUg -3'
miRNA:   3'- caUGCAg--CUC------GUGCuCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 20770 0.72 0.827263
Target:  5'- -gGCGUCGccgacauuggGGUuCGcGCCAUUGCCGCc -3'
miRNA:   3'- caUGCAGC----------UCGuGCuCGGUAAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 49479 0.73 0.772652
Target:  5'- cGUGCGUCGAGgguuaCGCGAucGUCA--GCCGCg -3'
miRNA:   3'- -CAUGCAGCUC-----GUGCU--CGGUaaUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 123950 0.73 0.772652
Target:  5'- cUGCGUCGguggcAGCGCGAGCgCA--AUCGCg -3'
miRNA:   3'- cAUGCAGC-----UCGUGCUCG-GUaaUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 77859 0.73 0.763039
Target:  5'- uUGCGUUGcGGC-CGAGUCGUUguccGCCGCa -3'
miRNA:   3'- cAUGCAGC-UCGuGCUCGGUAA----UGGCG- -5'
14698 5' -52.4 NC_003529.1 + 21267 0.74 0.713362
Target:  5'- -aACGuUCGuGCGCGGGCCG-UGCCGa -3'
miRNA:   3'- caUGC-AGCuCGUGCUCGGUaAUGGCg -5'
14698 5' -52.4 NC_003529.1 + 121557 0.74 0.69292
Target:  5'- uUACGUgacCGGGCGCGuugccGCCA-UACCGCa -3'
miRNA:   3'- cAUGCA---GCUCGUGCu----CGGUaAUGGCG- -5'
14698 5' -52.4 NC_003529.1 + 30257 1.13 0.003728
Target:  5'- aGUACGUCGAGCACGAGCCAUUACCGCa -3'
miRNA:   3'- -CAUGCAGCUCGUGCUCGGUAAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.