miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14699 3' -48.2 NC_003529.1 + 42653 0.65 0.999629
Target:  5'- -cACCGGAcaaaaguauUCGUUAAGCAaGCCg -3'
miRNA:   3'- uaUGGCCUaaau-----AGCGGUUUGUgCGG- -5'
14699 3' -48.2 NC_003529.1 + 21657 0.66 0.999554
Target:  5'- gAUGCUGGGca---CGCCGGGCAcuuuCGCCc -3'
miRNA:   3'- -UAUGGCCUaaauaGCGGUUUGU----GCGG- -5'
14699 3' -48.2 NC_003529.1 + 140694 0.66 0.999442
Target:  5'- --uUCGGGUUUAUUGUCGcguauauACGCGCa -3'
miRNA:   3'- uauGGCCUAAAUAGCGGUu------UGUGCGg -5'
14699 3' -48.2 NC_003529.1 + 58248 0.66 0.999307
Target:  5'- -cGCCGacg-UGUCGCaccgcagcguUAGGCGCGCCa -3'
miRNA:   3'- uaUGGCcuaaAUAGCG----------GUUUGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 69818 0.67 0.99895
Target:  5'- -aACCGcacAUgcAUCGCCAu-CACGCCc -3'
miRNA:   3'- uaUGGCc--UAaaUAGCGGUuuGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 125959 0.67 0.99895
Target:  5'- cAUACCGGuc---UCGCCGcACGaacuaGCCa -3'
miRNA:   3'- -UAUGGCCuaaauAGCGGUuUGUg----CGG- -5'
14699 3' -48.2 NC_003529.1 + 97745 0.67 0.998446
Target:  5'- -cACCGGuac--UCGCauuaaugAAGCGCGCCa -3'
miRNA:   3'- uaUGGCCuaaauAGCGg------UUUGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 145171 0.67 0.998446
Target:  5'- -gAUCGcGAgUUUGUUGCCAAuCGCGCa -3'
miRNA:   3'- uaUGGC-CU-AAAUAGCGGUUuGUGCGg -5'
14699 3' -48.2 NC_003529.1 + 43368 0.68 0.996813
Target:  5'- -aGCUGGAUUguUCGUuaCGGACACGUg -3'
miRNA:   3'- uaUGGCCUAAauAGCG--GUUUGUGCGg -5'
14699 3' -48.2 NC_003529.1 + 31217 0.68 0.996235
Target:  5'- uUugCGGGUUUAggcgCGCuCGAGagucagUACGCCa -3'
miRNA:   3'- uAugGCCUAAAUa---GCG-GUUU------GUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 72690 0.68 0.995574
Target:  5'- -cGCuCGGccaUUGUCGCCAAACGaaacguuuauUGCCa -3'
miRNA:   3'- uaUG-GCCua-AAUAGCGGUUUGU----------GCGG- -5'
14699 3' -48.2 NC_003529.1 + 66397 0.68 0.994821
Target:  5'- uUGCUcaGGAcgugGUCGUCAAACcCGCCg -3'
miRNA:   3'- uAUGG--CCUaaa-UAGCGGUUUGuGCGG- -5'
14699 3' -48.2 NC_003529.1 + 114267 0.69 0.99071
Target:  5'- -cGCCGcAUUuaauaaUGUCGCgAAACugGCCu -3'
miRNA:   3'- uaUGGCcUAA------AUAGCGgUUUGugCGG- -5'
14699 3' -48.2 NC_003529.1 + 30764 0.69 0.989361
Target:  5'- gAUACCGGcagccgCGCCAAGggcUACGCUa -3'
miRNA:   3'- -UAUGGCCuaaauaGCGGUUU---GUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 111070 0.7 0.982382
Target:  5'- -cACCGGAccagcgUUGUCGCCAaggaGAUACGaUCg -3'
miRNA:   3'- uaUGGCCUa-----AAUAGCGGU----UUGUGC-GG- -5'
14699 3' -48.2 NC_003529.1 + 123836 0.7 0.982382
Target:  5'- --gUCGGAUUcAUCGgggaCGAACAUGCCg -3'
miRNA:   3'- uauGGCCUAAaUAGCg---GUUUGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 129349 0.7 0.980193
Target:  5'- -aACCGGcgUUAUUGC-GAACAUGUCc -3'
miRNA:   3'- uaUGGCCuaAAUAGCGgUUUGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 74521 0.71 0.972414
Target:  5'- -aAUUGGAaaagUUUAUgGUCAAACugGCCa -3'
miRNA:   3'- uaUGGCCU----AAAUAgCGGUUUGugCGG- -5'
14699 3' -48.2 NC_003529.1 + 20701 0.73 0.941427
Target:  5'- uAUGCCGaGGg----CGUCGAGCAUGCCg -3'
miRNA:   3'- -UAUGGC-CUaaauaGCGGUUUGUGCGG- -5'
14699 3' -48.2 NC_003529.1 + 87472 0.81 0.593767
Target:  5'- --gUCGGGUUUGUCGUUuuGCACGCCu -3'
miRNA:   3'- uauGGCCUAAAUAGCGGuuUGUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.