miRNA display CGI

Results 1 - 12 of 12 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
147	3'	-56.5	AC_000006.1	+	3371	0.69	0.303702
	Target:  5'- -cUGGAGCUGaacUCGGUCCCGGuacaGGCc -3' miRNA:   3'- acACCUCGAU---AGUCGGGGUCuac-CCG- -5'
147	3'	-56.5	AC_000006.1	+	4067	0.66	0.45834
	Target:  5'- aGUGGuGCUAccucCAcCCCCGGGacGGGCu -3' miRNA:   3'- aCACCuCGAUa---GUcGGGGUCUa-CCCG- -5'
147	3'	-56.5	AC_000006.1	+	5130	0.67	0.438003
	Target:  5'- gGUGaAGggGUgGGCCCCuGGcUGGGCg -3' miRNA:   3'- aCACcUCgaUAgUCGGGGuCU-ACCCG- -5'
147	3'	-56.5	AC_000006.1	+	12378	0.7	0.295966
	Target:  5'- cUGUGGGGCgugcaGGCgCCCG--UGGGCg -3' miRNA:   3'- -ACACCUCGauag-UCG-GGGUcuACCCG- -5'
147	3'	-56.5	AC_000006.1	+	13350	0.69	0.319637
	Target:  5'- cGUGGcGCUGUC-GCCgCGGcgcGGGCg -3' miRNA:   3'- aCACCuCGAUAGuCGGgGUCua-CCCG- -5'
147	3'	-56.5	AC_000006.1	+	16234	0.69	0.310796
	Target:  5'- aUGUGGAGCccgagGUCAaggugcGCCCCaucaagcAGGUGGcGCc -3' miRNA:   3'- -ACACCUCGa----UAGU------CGGGG-------UCUACC-CG- -5'
147	3'	-56.5	AC_000006.1	+	23561	0.66	0.494023
	Target:  5'- aUGUGGGGCaugAUUAGCUgauCCAuGAugcgacgcaugaccuUGGGCg -3' miRNA:   3'- -ACACCUCGa--UAGUCGG---GGU-CU---------------ACCCG- -5'
147	3'	-56.5	AC_000006.1	+	23897	0.74	0.145078
	Target:  5'- aGUGGAGCacUGUCuGCCCCAGgcGGu- -3' miRNA:   3'- aCACCUCG--AUAGuCGGGGUCuaCCcg -5'
147	3'	-56.5	AC_000006.1	+	24674	0.7	0.266557
	Target:  5'- --aGGGGuCUAUCuggacCCCCAGAcGGGCg -3' miRNA:   3'- acaCCUC-GAUAGuc---GGGGUCUaCCCG- -5'
147	3'	-56.5	AC_000006.1	+	25474	1.11	0.000256
	Target:  5'- aUGUGGAGCUAUCAGCCCCAGAUGGGCc -3' miRNA:   3'- -ACACCUCGAUAGUCGGGGUCUACCCG- -5'
147	3'	-56.5	AC_000006.1	+	25528	0.67	0.438003
	Target:  5'- -cUGGGGCUGaUAGCUCCAcauguaaggGGUGGGa -3' miRNA:   3'- acACCUCGAUaGUCGGGGU---------CUACCCg -5'
147	3'	-56.5	AC_000006.1	+	29737	0.69	0.3447
	Target:  5'- gGUGGGGaaa--GGCCCUAGAcagucGGGCg -3' miRNA:   3'- aCACCUCgauagUCGGGGUCUa----CCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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