miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
147 5' -60 AC_000006.1 + 10792 0.66 0.380412
Target:  5'- aGGCGCC-CCCAGucucGCcagccCUUCGCCCu -3'
miRNA:   3'- cCCGCGGaGGGUCc---UGau---GAGGUGGG- -5'
147 5' -60 AC_000006.1 + 25550 0.66 0.371658
Target:  5'- aGGCGCCcgcggccaggCCCaucuGGGGCUgauaGCUCCACa- -3'
miRNA:   3'- cCCGCGGa---------GGG----UCCUGA----UGAGGUGgg -5'
147 5' -60 AC_000006.1 + 3594 0.66 0.353727
Target:  5'- uGGGCGCCcguccaccgucgaUCCCAucacauucuGACgaACUCCgGCCCa -3'
miRNA:   3'- -CCCGCGG-------------AGGGUc--------CUGa-UGAGG-UGGG- -5'
147 5' -60 AC_000006.1 + 20383 0.67 0.334799
Target:  5'- uGGGCGCCUucaccgaCCUGGGucagaacauguucuACgccaACUCgGCCCa -3'
miRNA:   3'- -CCCGCGGA-------GGGUCC--------------UGa---UGAGgUGGG- -5'
147 5' -60 AC_000006.1 + 11704 0.67 0.329984
Target:  5'- aGGCgGCCUCCaAGGcgcgccggcucgGCUGCcaaugcaggUCCGCCCc -3'
miRNA:   3'- cCCG-CGGAGGgUCC------------UGAUG---------AGGUGGG- -5'
147 5' -60 AC_000006.1 + 23606 0.67 0.317397
Target:  5'- cGGGUGUC-CUCGGGgcGCUGCUCCugacuuucaucgaggGCCUc -3'
miRNA:   3'- -CCCGCGGaGGGUCC--UGAUGAGG---------------UGGG- -5'
147 5' -60 AC_000006.1 + 4065 0.67 0.314307
Target:  5'- uGGUGCUaccuccaccCCCGGGACggGCUCaUGCCCa -3'
miRNA:   3'- cCCGCGGa--------GGGUCCUGa-UGAG-GUGGG- -5'
147 5' -60 AC_000006.1 + 5347 0.67 0.2992
Target:  5'- cGGaCGCuCUUCCaAGGGCaaGCUCCGCgCCa -3'
miRNA:   3'- cCC-GCG-GAGGG-UCCUGa-UGAGGUG-GG- -5'
147 5' -60 AC_000006.1 + 3826 0.68 0.29186
Target:  5'- aGGGCgGCCagcuggcggCUCAGGGCUuccaGCUCgGCCa -3'
miRNA:   3'- -CCCG-CGGa--------GGGUCCUGA----UGAGgUGGg -5'
147 5' -60 AC_000006.1 + 9723 0.68 0.263907
Target:  5'- gGGGCGUCggggucaCCCGcauGGAagACUCCGCCUc -3'
miRNA:   3'- -CCCGCGGa------GGGU---CCUgaUGAGGUGGG- -5'
147 5' -60 AC_000006.1 + 10046 0.68 0.263907
Target:  5'- gGGcGCGCCggccaCCCAGcGCUggccGCUCUACCg -3'
miRNA:   3'- -CC-CGCGGa----GGGUCcUGA----UGAGGUGGg -5'
147 5' -60 AC_000006.1 + 8450 0.68 0.257267
Target:  5'- aGGGCGCaacaCCGGGAcCUGCccgagcgCCACgCCg -3'
miRNA:   3'- -CCCGCGgag-GGUCCU-GAUGa------GGUG-GG- -5'
147 5' -60 AC_000006.1 + 26396 0.69 0.238167
Target:  5'- uGGUGCCUCCCcGGuCccGCUCgACCa -3'
miRNA:   3'- cCCGCGGAGGGuCCuGa-UGAGgUGGg -5'
147 5' -60 AC_000006.1 + 10750 0.7 0.214561
Target:  5'- gGGGCGCCuUCCCcGGA--GCgaCACCCc -3'
miRNA:   3'- -CCCGCGG-AGGGuCCUgaUGagGUGGG- -5'
147 5' -60 AC_000006.1 + 15413 0.7 0.208982
Target:  5'- gGGGCGCCgCCCgAGcuCUGCUgCGCCg -3'
miRNA:   3'- -CCCGCGGaGGG-UCcuGAUGAgGUGGg -5'
147 5' -60 AC_000006.1 + 25775 0.83 0.020848
Target:  5'- cGGCGCUUCCCGGuGCccGCUCCGCCCa -3'
miRNA:   3'- cCCGCGGAGGGUCcUGa-UGAGGUGGG- -5'
147 5' -60 AC_000006.1 + 25508 1.14 0.000088
Target:  5'- cGGGCGCCUCCCAGGACUACUCCACCCg -3'
miRNA:   3'- -CCCGCGGAGGGUCCUGAUGAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.