miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1470 3' -55.4 NC_001335.1 + 22433 0.66 0.717271
Target:  5'- uCAUCGCUcAGGuCGaagaUCCGGUcGAUCa -3'
miRNA:   3'- -GUAGCGGuUCC-GCa---AGGCCGaCUAGc -5'
1470 3' -55.4 NC_001335.1 + 25806 0.66 0.717271
Target:  5'- -cUCGCCGucGGCGggCUGGCgu-UCGc -3'
miRNA:   3'- guAGCGGUu-CCGCaaGGCCGacuAGC- -5'
1470 3' -55.4 NC_001335.1 + 46232 0.66 0.706518
Target:  5'- uCAUCGCCGAGGCa--UCGGCU--UCc -3'
miRNA:   3'- -GUAGCGGUUCCGcaaGGCCGAcuAGc -5'
1470 3' -55.4 NC_001335.1 + 8164 0.66 0.695691
Target:  5'- --aCGCCAccGGGuUGUUCgGGCUGG-CGu -3'
miRNA:   3'- guaGCGGU--UCC-GCAAGgCCGACUaGC- -5'
1470 3' -55.4 NC_001335.1 + 41672 0.66 0.695691
Target:  5'- --aCGCCuGGGg---CCGGCUGGUCu -3'
miRNA:   3'- guaGCGGuUCCgcaaGGCCGACUAGc -5'
1470 3' -55.4 NC_001335.1 + 20608 0.66 0.684803
Target:  5'- aCcgCGCCGAGcGCGgcgagCUGGCUG-UUGa -3'
miRNA:   3'- -GuaGCGGUUC-CGCaa---GGCCGACuAGC- -5'
1470 3' -55.4 NC_001335.1 + 28096 0.66 0.684803
Target:  5'- aCGUUGUCGGGGCGUUCggCGGUguagacgccGAUCu -3'
miRNA:   3'- -GUAGCGGUUCCGCAAG--GCCGa--------CUAGc -5'
1470 3' -55.4 NC_001335.1 + 3103 0.66 0.662885
Target:  5'- -cUCGCCAAGGCGag-CGGCgggagcugaUGGUCc -3'
miRNA:   3'- guAGCGGUUCCGCaagGCCG---------ACUAGc -5'
1470 3' -55.4 NC_001335.1 + 11605 0.67 0.618787
Target:  5'- aCGUCGCCGguccAGuGCGggaucUUCUGGCcGGUCGu -3'
miRNA:   3'- -GUAGCGGU----UC-CGC-----AAGGCCGaCUAGC- -5'
1470 3' -55.4 NC_001335.1 + 37306 0.69 0.499072
Target:  5'- aCAUCGCCGguuacgcAGGCGUUCUGGagaaGAUg- -3'
miRNA:   3'- -GUAGCGGU-------UCCGCAAGGCCga--CUAgc -5'
1470 3' -55.4 NC_001335.1 + 8706 0.71 0.398038
Target:  5'- gCAUCGCCGAGGCGgaaacccucgaCGGcCUGGcgcUCGg -3'
miRNA:   3'- -GUAGCGGUUCCGCaag--------GCC-GACU---AGC- -5'
1470 3' -55.4 NC_001335.1 + 26682 0.73 0.316528
Target:  5'- aCAUCGCCGacggccggcucaAGGcCGUUcggcucgguccCCGGCUGAUCc -3'
miRNA:   3'- -GUAGCGGU------------UCC-GCAA-----------GGCCGACUAGc -5'
1470 3' -55.4 NC_001335.1 + 32042 0.74 0.250186
Target:  5'- aCGUCGCCGAGGCGUgcucgaacacgcucUCgUGGCccaGAUCGa -3'
miRNA:   3'- -GUAGCGGUUCCGCA--------------AG-GCCGa--CUAGC- -5'
1470 3' -55.4 NC_001335.1 + 15207 1.07 0.0012
Target:  5'- uCAUCGCCAAGGCGUUCCGGCUGAUCGc -3'
miRNA:   3'- -GUAGCGGUUCCGCAAGGCCGACUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.